PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.2570s0105.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YA
Protein Properties Length: 295aa    MW: 32040 Da    PI: 10.066
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.2570s0105.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA93.32.8e-29136195258
            CBFB_NFYA   2 eplYVNaKQyqrIlkRRqkRaklee...ekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           ++YVN+KQy++I++RRq+Rak+ +   +kkl++++rkpy+h+SRh hAlrRpRgsgGrF
  Bostr.2570s0105.1.p 136 GTIYVNSKQYHAIIRRRQSRAKASAvldQKKLSSRCRKPYMHHSRHLHALRRPRGSGGRF 195
                          689*********************9999*******************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005218.7E-31133198IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115234.884134198IPR001289Nuclear transcription factor Y subunit A
PfamPF020451.3E-23137195IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-21137159IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006163.0E-21172195IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009567Biological Processdouble fertilization forming a zygote and endosperm
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 295 aa     Download sequence    Send to blast
MAMQTMREGL FSAPQTSWCY AFGSQPLAQE SLAGDSDSFS GVKVGSAGET EQGVAKQSNS  60
ATHLAFSLGD VKSSRVVSKP HGAAFSMQSP SLELGFTHPP IYTKYPYGEQ QYYGVVSAYG  120
SQSRVMIPLN METEDGTIYV NSKQYHAIIR RRQSRAKASA VLDQKKLSSR CRKPYMHHSR  180
HLHALRRPRG SGGRFLNTKS QNLEKSGNNA KKADGNKQIQ SQPKPQQSNS QNSEVVHPES  240
GTMNLSNGLN VTGSEVTSMN YFLSSPVHSL GGMVMPSKWM AAAAMDNGCC NFKT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4g91_A5e-16135196260HAPB protein
4g92_A5e-16135196260HAPB protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtStimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.2570s0105.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0260620.0BT026062.1 Arabidopsis thaliana At3g05690 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010430951.10.0PREDICTED: nuclear transcription factor Y subunit A-2
RefseqXP_010430980.10.0PREDICTED: nuclear transcription factor Y subunit A-2
SwissprotQ9M9X40.0NFYA2_ARATH; Nuclear transcription factor Y subunit A-2
TrEMBLA0A178VK230.0A0A178VK23_ARATH; UNE8
TrEMBLR0HMJ60.0R0HMJ6_9BRAS; Uncharacterized protein
STRINGBostr.2570s0105.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM30082767
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05690.10.0nuclear factor Y, subunit A2
Publications ? help Back to Top
  1. Zhao H, et al.
    The Arabidopsis thaliana Nuclear Factor Y Transcription Factors.
    Front Plant Sci, 2016. 7: p. 2045
    [PMID:28119722]
  2. Nasim Z,Fahim M,Ahn JH
    Possible Role of MADS AFFECTING FLOWERING 3 and B-BOX DOMAIN PROTEIN 19 in Flowering Time Regulation of Arabidopsis Mutants with Defects in Nonsense-Mediated mRNA Decay.
    Front Plant Sci, 2017. 8: p. 191
    [PMID:28261246]
  3. Zhang M,Hu X,Zhu M,Xu M,Wang L
    Transcription factors NF-YA2 and NF-YA10 regulate leaf growth via auxin signaling in Arabidopsis.
    Sci Rep, 2017. 7(1): p. 1395
    [PMID:28469131]