PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2570s0083.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 227aa MW: 26581.3 Da PI: 8.7239 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 53.2 | 3.7e-17 | 10 | 50 | 2 | 42 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42 i+n+s r+ tf kR +g+ KK +ELSvLC++e++ +i+s+ Bostr.2570s0083.1.p 10 YIDNDSMRKATFNKRNKGLVKKIHELSVLCGIEACAVIYSP 50 59**************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF55455 | 2.62E-24 | 1 | 85 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 17.563 | 1 | 49 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 6.3E-23 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00266 | 1.27E-32 | 2 | 85 | No hit | No description |
PRINTS | PR00404 | 2.1E-10 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 2.5E-16 | 11 | 51 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-10 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.1E-10 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 227 aa Download sequence Send to blast |
MTRKKLNLSY IDNDSMRKAT FNKRNKGLVK KIHELSVLCG IEACAVIYSP FNSNPEVWPS 60 NLGVKNVVEK FEMLTEMEQE KKMVNHEGFL KQNISKAVEN NNKKMKDNAE RTMKEAMFQL 120 LRGEKLKLTN KNREDLCKYI DQYLKELHHH KNETLKQFHE ATNVMAPTSI VEVMINPVGV 180 YDQNPNFNHR SHNHYQYQQQ YGYPIMPQDG IYNASQNQDQ QEEWLV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. Controls central cell differentiation during female gametophyte development. Required for the expression of DEMETER and DD46, but not for the expression of FIS2 (PubMed:16798889). Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction (Probable). {ECO:0000269|PubMed:16798889, ECO:0000305|PubMed:26462908}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2570s0083.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB830706 | 0.0 | AB830706.1 Turritis glabra AGL45 gene for agamous-like MADS-box protein AGL45, partial cds, isolate: e074. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020889035.1 | 1e-125 | agamous-like MADS-box protein AGL80 isoform X1 | ||||
Swissprot | Q9FJK3 | 7e-48 | AGL80_ARATH; Agamous-like MADS-box protein AGL80 | ||||
TrEMBL | F4J9K3 | 1e-118 | F4J9K3_ARATH; MADS-box transcription factor family protein | ||||
STRING | Bostr.2570s0083.1.p | 1e-169 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM70 | 28 | 415 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G05860.1 | 1e-120 | M-type_MADS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2570s0083.1.p |
Publications ? help Back to Top | |||
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