PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25570s0024.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GRAS | ||||||||
Protein Properties | Length: 594aa MW: 66870.4 Da PI: 4.6892 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 433.4 | 1.7e-132 | 224 | 592 | 3 | 373 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPil 91 + L++cA+a+s+g+ e+a +++++l++++s +gdp qR+aay++e+Laar+a s++ +y+al+++e + s+e+laa+++++ev+P++ Bostr.25570s0024.1.p 224 QILISCARALSEGKSEEALSMVNELRQIVSIQGDPSQRIAAYMVEGLAARMAASGKFIYRALKCKEPP---SDERLAAMQVLFEVCPCF 309 78*****************************************************************9...9***************** PP GRAS 92 kfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfef 178 kf++l+aN aI e++egee+vHiiDfdi+qG Q+++L++++a+ p++ p+lR+Tg+++pes+ s l+ +g rL+++A+ gv+f+f Bostr.25570s0024.1.p 310 KFGFLAANGAIIEEIEGEEEVHIIDFDINQGNQYMTLIRSIAELPGKRPRLRLTGIDDPESVqrSIGGLRIIGLRLEQLAKDHGVSFKF 398 ************************************************************9988899********************** PP GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysal 267 ++ v ++++ +++++L +kpgE+l+Vn+++qlh+++desv++ ++rde+L++vksl+Pk+v+vveq++++n+++F+ rf+ea eyysa+ Bostr.25570s0024.1.p 399 KA-VPSKTSVVSPSTLGCKPGETLIVNFAFQLHHMPDESVTTVNQRDELLHMVKSLNPKLVTVVEQDVNTNTSPFFSRFIEAYEYYSAV 486 **.7************************************************************************************* PP GRAS 268 fdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesg 356 f+sl+++lpres+er++vEr++l+r+ivn+vaceg+er+er e ++kWr+r+++aGF++ p+s +++++ + l+++ + + y+++ee g Bostr.25570s0024.1.p 487 FESLDMTLPRESQERMNVERQCLARDIVNIVACEGEERIERYEAAGKWRARMMMAGFNSRPMSARVTNDLQNLIKQQYCNKYKIKEEMG 575 ******************************************************************************888******** PP GRAS 357 slvlgWkdrpLvsvSaW 373 +l ++W++++L+++S W Bostr.25570s0024.1.p 576 ELHFCWEEKSLIVASGW 592 ***************** PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 63.844 | 196 | 573 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 5.8E-130 | 224 | 592 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 594 aa Download sequence Send to blast |
MVEQTVVREH IKARIMSLVR SAEPSSYRNP KLYSLNENGN NIGVTSAQIF DQDRSKNPCL 60 TDDSYPSQSY EKYFLDSPTD EFVQHPIGSG ASVSSFGSLD SFPYQSRPVL GCSMEFKLPF 120 DSTSTSSTRL LGDYQAVSYS PSMDVVEEFD DEQMRSKIQE LERALLDDED DKMIGIDNLM 180 EIDNEWSYQN ESEQHQDSPK ESSSADSNSH VSSKEVVSQT TPKQILISCA RALSEGKSEE 240 ALSMVNELRQ IVSIQGDPSQ RIAAYMVEGL AARMAASGKF IYRALKCKEP PSDERLAAMQ 300 VLFEVCPCFK FGFLAANGAI IEEIEGEEEV HIIDFDINQG NQYMTLIRSI AELPGKRPRL 360 RLTGIDDPES VQRSIGGLRI IGLRLEQLAK DHGVSFKFKA VPSKTSVVSP STLGCKPGET 420 LIVNFAFQLH HMPDESVTTV NQRDELLHMV KSLNPKLVTV VEQDVNTNTS PFFSRFIEAY 480 EYYSAVFESL DMTLPRESQE RMNVERQCLA RDIVNIVACE GEERIERYEA AGKWRARMMM 540 AGFNSRPMSA RVTNDLQNLI KQQYCNKYKI KEEMGELHFC WEEKSLIVAS GWS* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 3e-55 | 229 | 593 | 25 | 378 | Protein SCARECROW |
5b3h_D | 3e-55 | 229 | 593 | 25 | 378 | Protein SCARECROW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25570s0024.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC015447 | 0.0 | AC015447.8 Arabidopsis thaliana chromosome I BAC F24J8 genomic sequence, complete sequence. | |||
GenBank | AY045833 | 0.0 | AY045833.1 Arabidopsis thaliana putative scarecrow 1 protein (At1g21450) mRNA, complete cds. | |||
GenBank | AY096626 | 0.0 | AY096626.1 Arabidopsis thaliana unknown protein (At1g21450) mRNA, complete cds. | |||
GenBank | CP002684 | 0.0 | CP002684.1 Arabidopsis thaliana chromosome 1 sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020867511.1 | 0.0 | scarecrow-like protein 1 | ||||
Refseq | XP_020867512.1 | 0.0 | scarecrow-like protein 1 | ||||
Swissprot | Q9SDQ3 | 0.0 | SCL1_ARATH; Scarecrow-like protein 1 | ||||
TrEMBL | D7KK12 | 0.0 | D7KK12_ARALL; Uncharacterized protein | ||||
STRING | Bostr.25570s0024.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6953 | 27 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G21450.1 | 0.0 | SCARECROW-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25570s0024.1.p |
Publications ? help Back to Top | |||
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