PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25542s0114.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB_related | ||||||||
Protein Properties | Length: 101aa MW: 11366.6 Da PI: 9.0351 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.6 | 2.8e-08 | 12 | 57 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 g+WT+ + + +a + + + +W +a+ +g g+t +++k ++ Bostr.25542s0114.1.p 12 GSWTAKQNKAFEQALATYDQDtpnRWYNVAKVVG-GKTTEEVKRHYE 57 89*****************99*************.**********96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.667 | 6 | 60 | IPR017877 | Myb-like domain |
SMART | SM00717 | 6.6E-8 | 10 | 62 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 1.5E-6 | 12 | 57 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.35E-12 | 12 | 68 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.1E-5 | 13 | 66 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 1.43E-6 | 14 | 60 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 101 aa Download sequence Send to blast |
MASSSMSSYS SGSWTAKQNK AFEQALATYD QDTPNRWYNV AKVVGGKTTE EVKRHYELLV 60 QDINSIEDGH VPFPNYRTSG GCTNGRLSQE EKRMRNMRLQ * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-36 | 10 | 100 | 7 | 93 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25542s0114.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ375231 | 1e-124 | DQ375231.1 Arabidopsis thaliana AtRL1 (At4g39250) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_195636.2 | 1e-60 | RAD-like 1 | ||||
Swissprot | F4JVB8 | 1e-61 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A178UXD0 | 3e-59 | A0A178UXD0_ARATH; RSM2 | ||||
STRING | Bostr.25542s0114.1.p | 6e-71 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM221 | 28 | 198 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 1e-62 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25542s0114.1.p |
Publications ? help Back to Top | |||
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