PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25542s0104.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 495aa    MW: 55791.2 Da    PI: 4.3098
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25542s0104.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.62.5e-07355394344
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                           rW++++ +l++++++++G++  + I + ++ +Rt++q k+++
  Bostr.25542s0104.1.p 355 RWSKQDTKLFYEGIREFGSN-LSMIRQLFP-NRTREQMKLKF 394
                           9*****************99.*********.******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS512939.604351402IPR017884SANT domain
SMARTSM007171.8E-5352400IPR001005SANT/Myb domain
PfamPF159635.8E-22353428No hitNo description
Gene3DG3DSA:1.10.10.607.6E-4354395IPR009057Homeodomain-like
SuperFamilySSF466896.73E-9355404IPR009057Homeodomain-like
CDDcd001679.86E-5355395No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 495 aa     Download sequence    Send to blast
MDLDFDDQPS DHAAPAVRTG ARFKPKARPQ PKKQEKLSTQ SEDSVSLDES STIPNKALPY  60
ETNVPDSETI NQCTIETLSE EVMWGGRCDD GIEAATTIFG DFVTPETGED EGCLDMETLD  120
IVQEEGTTSS YVQHTGKFRP KPRLLDTVVE EPVPHYSIDG TGYFSMSTNE SELMVNVESR  180
NGFNTYGNLQ EDVNIIEAPR ETVTEMEERN AYGGWDNYTC TCEEENCLGN TLEEERFGRE  240
RKKGKSKGAT ALKRKNTSEE APNKSSEKPE KKLKHSCHRQ KRILEKELLE TPDDEIRFLP  300
IRDMLRLVEY KEWMEKKETK GVVVPPTQES NMNASGSQYS SQGFDAGDEF GMETRWSKQD  360
TKLFYEGIRE FGSNLSMIRQ LFPNRTREQM KLKFKLEERR YPLKLNDALS SRSKPAAAKE  420
AEEEAGAEAD TTDVPENEVP EKSEETERAS DGIAGVKESD GGDIENGVRS DGGDDECDDN  480
EGDDDFWKFY KSDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1240254RKKGKSKGATALKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25542s0104.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ6304891e-116AJ630489.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At4g39160.
GenBankBT0234411e-116BT023441.1 Arabidopsis thaliana At4g39160 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283385.10.0uncharacterized protein LOC17879919
RefseqXP_023635539.10.0uncharacterized protein LOC17879919
RefseqXP_023635540.10.0uncharacterized protein LOC17879919
TrEMBLR0GHJ60.0R0GHJ6_9BRAS; Uncharacterized protein
STRINGBostr.25542s0104.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.10.0MYB_related family protein