PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25463s0411.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 422aa MW: 49218.6 Da PI: 4.5636 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 93.4 | 3.6e-29 | 4 | 133 | 2 | 128 |
NAM 2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknra......tksg 81 p+G rF+P+d lv yL++ ve+k+ ++ i+++d+y+ ePw Lp+ v++ ++kewy+F++r+k gk ++r+ + g Bostr.25463s0411.1.p 4 PVGTRFDPKDLGLVRLYLRNMVERKQSSF---ITTMDVYQDEPWLLPH-VSNplfKNKEWYYFVPRNKLR--GKIPRRTvpgrggSEGG 86 89***********************9666...9**************4.233355889*******99865..5555564345555789* PP NAM 82 yWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 yWk+t +k++l+ +++++g k+ L++++ + +g ktdW+m ey+l Bostr.25463s0411.1.p 87 YWKSTDGKKDILDGHNRVMGYKQCLTYHTRVHGEGMKTDWLMTEYSL 133 *********************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.27E-37 | 2 | 150 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 37.187 | 3 | 151 | IPR003441 | NAC domain |
Pfam | PF02365 | 5.3E-17 | 4 | 133 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MRFPVGTRFD PKDLGLVRLY LRNMVERKQS SFITTMDVYQ DEPWLLPHVS NPLFKNKEWY 60 YFVPRNKLRG KIPRRTVPGR GGSEGGYWKS TDGKKDILDG HNRVMGYKQC LTYHTRVHGE 120 GMKTDWLMTE YSLHKGDDEF QDLVLCRIRD KTKTKVNKFE YVRQTQPQPQ PQVAENTDRD 180 VTEQQQEEVG LTGFDDELET MMLEGQEDRD VTEQQQEEEI QIIPLAQIHE NNNNVMMLNQ 240 QVQEKAGLAG FANELDMLKL MLEGEQDRVI QLQQQQLYEE ILIFPPMQSG DNNNNNNNKN 300 NNEVMIMSIQ LVDHLIGLGD KLKMMMLGGQ EERDVTQHKQ KQLEEEIPIP PPMQNNDNTN 360 NDDVMMMWNQ EQFQLLQPIP QAQDPSQLVG QDDTMVLMNN PINALELENY EFIDLTRKQR 420 T* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 3e-19 | 1 | 151 | 18 | 168 | NAC domain-containing protein 19 |
3swm_B | 3e-19 | 1 | 151 | 18 | 168 | NAC domain-containing protein 19 |
3swm_C | 3e-19 | 1 | 151 | 18 | 168 | NAC domain-containing protein 19 |
3swm_D | 3e-19 | 1 | 151 | 18 | 168 | NAC domain-containing protein 19 |
3swp_A | 3e-19 | 1 | 151 | 18 | 168 | NAC domain-containing protein 19 |
3swp_B | 3e-19 | 1 | 151 | 18 | 168 | NAC domain-containing protein 19 |
3swp_C | 3e-19 | 1 | 151 | 18 | 168 | NAC domain-containing protein 19 |
3swp_D | 3e-19 | 1 | 151 | 18 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25463s0411.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645676.1 | 1e-156 | NAC domain-containing protein 6 | ||||
TrEMBL | R0I9X6 | 1e-173 | R0I9X6_9BRAS; Uncharacterized protein (Fragment) | ||||
STRING | Bostr.25463s0411.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14544 | 11 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G03490.1 | 1e-57 | NAC domain containing protein 6 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25463s0411.1.p |