PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25463s0283.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 342aa MW: 39011.5 Da PI: 7.4605 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 172.1 | 1.6e-53 | 9 | 138 | 1 | 129 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvka...eekewyfFskrdkkyatgkrknratksgyWkat 86 +ppGfrFhPtdeel+++yLkkk++ +k+e+ evi+evd++k+ePwdL++++k ++ewyfFs++d+ky+tg+r+nrat++g+Wkat Bostr.25463s0283.1.p 9 VPPGFRFHPTDEELLHYYLKKKISYHKFEM-EVIREVDLNKLEPWDLQERCKIgstPQNEWYFFSHKDRKYPTGSRTNRATHAGFWKAT 96 69****************************.99**************964444222455****************************** PP NAM 87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129 g+dk + + + +++g++ktLvfykgrap+g+ktdW+mheyrle Bostr.25463s0283.1.p 97 GRDKCIRN-SYKKIGMRKTLVFYKGRAPHGQKTDWIMHEYRLE 138 *******9.8999****************************85 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.05E-60 | 8 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 58 | 9 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 8.7E-28 | 10 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009834 | Biological Process | plant-type secondary cell wall biogenesis | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0048829 | Biological Process | root cap development | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 342 aa Download sequence Send to blast |
MGSSSNGGVP PGFRFHPTDE ELLHYYLKKK ISYHKFEMEV IREVDLNKLE PWDLQERCKI 60 GSTPQNEWYF FSHKDRKYPT GSRTNRATHA GFWKATGRDK CIRNSYKKIG MRKTLVFYKG 120 RAPHGQKTDW IMHEYRLEDA DDPQTNPSED GWVVCRVFMK KNLFKVVNEG GSSINSSDQH 180 IHDASNNNHT LQARSFMHRD SPYQLVRNHG ATTFELNKPD LALHQYPPIF HKPPTLGFDY 240 SSGLARDCES AASEGLQYQQ ACEPGLEVGT CETVASHNHQ QGLGEWAMMD RLVTCHMGNE 300 DSSRGIRFED GNNNSSSVVQ PVPATNQLTL RSEMDFWGYS K* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 4e-51 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 4e-51 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 4e-51 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 4e-51 | 9 | 162 | 17 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-51 | 9 | 162 | 20 | 170 | NAC domain-containing protein 19 |
4dul_A | 4e-51 | 9 | 162 | 17 | 167 | NAC domain-containing protein 19 |
4dul_B | 4e-51 | 9 | 162 | 17 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator. Together with BRN1 and SMB, regulates cellular maturation of root cap. Promotes the expression of genes involved in secondary cell walls (SCW) biosynthesis. {ECO:0000269|PubMed:20197506}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00431 | DAP | Transfer from AT4G10350 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25463s0283.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY133681 | 0.0 | AY133681.1 Arabidopsis thaliana clone C103095 putative NAM/NAP (At4g10350) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010421954.1 | 0.0 | PREDICTED: protein BEARSKIN2 | ||||
Swissprot | Q9SV87 | 0.0 | BRN2_ARATH; Protein BEARSKIN2 | ||||
TrEMBL | R0FKW8 | 0.0 | R0FKW8_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.25463s0283.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5213 | 26 | 48 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G10350.1 | 0.0 | NAC domain containing protein 70 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25463s0283.1.p |
Publications ? help Back to Top | |||
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