PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25463s0219.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family WRKY
Protein Properties Length: 303aa    MW: 33582.4 Da    PI: 5.9688
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25463s0219.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY88.46.2e-28126186259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           dD y+WrKYGqK++ g+++prsYYrCt++    C+++k+v+rs+ dp+++e+tY+g+H+++
  Bostr.25463s0219.1.p 126 DDVYSWRKYGQKDILGAKYPRSYYRCTFRnsqCCWATKQVQRSDGDPTIFEVTYRGTHTCS 186
                           8**************************99776799************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081121.654120183IPR003657WRKY domain
Gene3DG3DSA:2.20.25.803.8E-27121186IPR003657WRKY domain
SuperFamilySSF1182903.01E-24124186IPR003657WRKY domain
SMARTSM007743.1E-37125187IPR003657WRKY domain
PfamPF031066.0E-25126185IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MEMMNWEQRN LLNELINGLR AAKQLQASPS PSSSSSSSCV TMEMKESLLQ QIVSSFEKAI  60
LMLNGSHNSG KVPESPASIT ESPRSEEFLD VGSKDYSLCS KKRKTLPKWT EQVRISPERG  120
LEGPHDDVYS WRKYGQKDIL GAKYPRSYYR CTFRNSQCCW ATKQVQRSDG DPTIFEVTYR  180
GTHTCSQGIP PPEKRETKPN PTVEVNYQNN PLDNLRTNLT LRTDGLGGDG FSFPVTPPFY  240
SYDSIQGGGT FCHVGSSGPS DFTGLISTNT STGSSPIFDV DFHFDPTAEI DTGFPTFLHD  300
SI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-18126185968OsWRKY45
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25463s0219.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002872545.11e-177probable WRKY transcription factor 41
SwissprotQ8H0Y81e-167WRK41_ARATH; Probable WRKY transcription factor 41
TrEMBLD7LYW11e-175D7LYW1_ARALL; WRKY DNA-binding protein 41
STRINGBostr.25463s0219.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19332783
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11070.11e-159WRKY family protein
Publications ? help Back to Top
  1. Duan S, et al.
    Functional characterization of a heterologously expressed Brassica napus WRKY41-1 transcription factor in regulating anthocyanin biosynthesis in Arabidopsis thaliana.
    Plant Sci., 2018. 268: p. 47-53
    [PMID:29362083]