PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25463s0156.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HSF | ||||||||
Protein Properties | Length: 367aa MW: 39060.5 Da PI: 4.5902 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 114.5 | 7.1e-36 | 52 | 144 | 2 | 103 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXX CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgk 90 Fl+k+y++++d+ ++elisw+e+g++f+v+ + efa+++LpkyFkh+nf+SFvRQLn+YgF+kv ++ weF+++ F++g+ Bostr.25463s0156.1.p 52 FLTKTYQLVDDPVYDELISWNEDGTTFIVWRPAEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVVPDR---------WEFSNECFRRGE 131 9*****************************************************************99.........************ PP XXXXXXXXXXXXX CS HSF_DNA-bind 91 kellekikrkkse 103 k ll++i+r+k + Bostr.25463s0156.1.p 132 KILLRDIQRRKIS 144 **********865 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00415 | 3.8E-58 | 48 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 1.56E-34 | 49 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
Gene3D | G3DSA:1.10.10.10 | 8.8E-38 | 49 | 141 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 2.7E-20 | 52 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 1.1E-31 | 52 | 141 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-20 | 90 | 102 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PROSITE pattern | PS00434 | 0 | 91 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 2.7E-20 | 103 | 115 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene3D | G3DSA:1.20.5.170 | 8.4E-5 | 215 | 242 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 367 aa Download sequence Send to blast |
MPGEQTGETP TVAGVGGGGT GCSAGNSGGS SGCGAGGGGG GGDSQRSIPT PFLTKTYQLV 60 DDPVYDELIS WNEDGTTFIV WRPAEFARDL LPKYFKHNNF SSFVRQLNTY GFRKVVPDRW 120 EFSNECFRRG EKILLRDIQR RKISQPAMAA AAAAVAASAV TVAAVPVTVA HAVSPSNSGE 180 EQVISCNSSP AAAAAATGLV GVGLQRTTSC TTAPELVEEN ERLRKENMQL SQELTKLKGL 240 YANIYTLMAN FTPSQADCAN LLTEGKPLDL LPERQGMSDE AMAMASRIDT GIGLKLDEDL 300 TPRLFGVSIG VKRARREEEL GAPEEEDGDR QEAVTREGEQ GSDVKAEPME ENNSSNHNGP 360 WLELGK* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 2e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
5hdn_A | 2e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
5hdn_B | 2e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
5hdn_C | 2e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
5hdn_D | 2e-27 | 52 | 141 | 10 | 110 | Heat shock factor protein 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE). |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00432 | DAP | Transfer from AT4G11660 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25463s0156.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY093206 | 0.0 | AY093206.1 Arabidopsis thaliana heat shock transcription factor-like protein (At4g11660) mRNA, complete cds. | |||
GenBank | BT008471 | 0.0 | BT008471.1 Arabidopsis thaliana At4g11660 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010455582.1 | 0.0 | PREDICTED: heat stress transcription factor B-2b-like | ||||
Swissprot | Q9T0D3 | 1e-169 | HFB2B_ARATH; Heat stress transcription factor B-2b | ||||
TrEMBL | V4N026 | 0.0 | V4N026_EUTSA; Uncharacterized protein | ||||
STRING | Bostr.25463s0156.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM965 | 28 | 111 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G11660.1 | 1e-154 | HSF family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25463s0156.1.p |
Publications ? help Back to Top | |||
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