PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25375s0003.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 409aa    MW: 44980.1 Da    PI: 5.1459
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25375s0003.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS373.92e-114424022374
                  GRAS   2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlar.svselykalppsetseknsseelaalklfsevsP 89 
                            +lLl+cAe v++++l +a++lL+++se++sp g++ +R++ayf++AL+ar+ +   s+ +  l+ ++ s  +s++++aal++f+ vsP
  Bostr.25375s0003.1.p  42 LSLLLQCAEYVATDHLPEASTLLSEISETCSPFGSSSERVVAYFAQALQARVISsYLSGACPPLSENPLSVVQSQKTFAALQTFNSVSP 130
                           689*************************************************99567777888888888888899************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesgskeeleetgerLakfAeelgvpfef 178
                           ++kfsh+taNqaI +a++ge+ vHiiD+d++qGlQWpaL++ LasRp++  s+RiTg+g     s+e l +tg+rLa+fA++l++pfef
  Bostr.25375s0003.1.p 131 LIKFSHFTANQAIFQALDGEDSVHIIDLDVMQGLQWPALFHILASRPRKLRSIRITGFGF----SSELLASTGRRLADFASSLNLPFEF 215
                           ************************************************************....99*********************** PP

                  GRAS 179 nvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh.nsesFlerflealeyysa 266
                           +++  k  + +e+++L +++gEa++V+++   hrl+d +++  +    +L+++++l+P++++vveqe+++ +++sFl rf+eal+yysa
  Bostr.25375s0003.1.p 216 HPIEGKLGNLIETSQLGTRQGEAVVVHWMQ--HRLYDITGNYLE----TLDILRRLKPNLITVVEQELSYdDGGSFLGRFVEALHYYSA 298
                           **877788888******************9..9**988888877....**********************8999*************** PP

                  GRAS 267 lfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveees 355
                           lfd+l  +l++es er +vE+ +l+ ei+n+va+ g        + +kW+e l ++GF+pv+l+ + a+qa lll + +++gy++ e++
  Bostr.25375s0003.1.p 299 LFDALGDGLGEESVERFTVEQLVLATEIRNIVAHGGGG----GGRRMKWKEELYRVGFRPVSLQGNPATQAGLLLGMLPWNGYTLVEDN 383
                           *************************************9....555678***************************************** PP

                  GRAS 356 gslvlgWkdrpLvsvSaWr 374
                           g+l lgWkd pL+++SaW+
  Bostr.25375s0003.1.p 384 GTLRLGWKDLPLLTASAWK 402
                           ******************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098555.76915382IPR005202Transcription factor GRAS
PfamPF035146.8E-11242402IPR005202Transcription factor GRAS
Sequence ? help Back to Top
Protein Sequence    Length: 409 aa     Download sequence    Send to blast
MTTKRIDRDF PSSDDPSVAK RRIDDIEFPE ETLGGAAAIK LLSLLLQCAE YVATDHLPEA  60
STLLSEISET CSPFGSSSER VVAYFAQALQ ARVISSYLSG ACPPLSENPL SVVQSQKTFA  120
ALQTFNSVSP LIKFSHFTAN QAIFQALDGE DSVHIIDLDV MQGLQWPALF HILASRPRKL  180
RSIRITGFGF SSELLASTGR RLADFASSLN LPFEFHPIEG KLGNLIETSQ LGTRQGEAVV  240
VHWMQHRLYD ITGNYLETLD ILRRLKPNLI TVVEQELSYD DGGSFLGRFV EALHYYSALF  300
DALGDGLGEE SVERFTVEQL VLATEIRNIV AHGGGGGGRR MKWKEELYRV GFRPVSLQGN  360
PATQAGLLLG MLPWNGYTLV EDNGTLRLGW KDLPLLTASA WKSCQPSD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-1424740125378Protein SCARECROW
5b3h_A1e-1424740124377Protein SCARECROW
5b3h_D1e-1424740124377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25375s0003.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB0170670.0AB017067.1 Arabidopsis thaliana genomic DNA, chromosome 5, P1 clone:MJC20.
GenBankBT0297600.0BT029760.1 Arabidopsis thaliana At5g41920 mRNA, complete cds.
GenBankCP0026880.0CP002688.1 Arabidopsis thaliana chromosome 5 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020875190.10.0scarecrow-like protein 23
SwissprotQ9FHZ10.0SCL23_ARATH; Scarecrow-like protein 23
TrEMBLD7MIP90.0D7MIP9_ARALL; Scarecrow transcription factor family protein
STRINGBostr.25375s0003.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM125122631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G41920.10.0GRAS family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Yoon EK, et al.
    Conservation and Diversification of the SHR-SCR-SCL23 Regulatory Network in the Development of the Functional Endodermis in Arabidopsis Shoots.
    Mol Plant, 2016. 9(8): p. 1197-1209
    [PMID:27353361]