PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25375s0002.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 335aa MW: 38104.5 Da PI: 6.5224 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 94.8 | 1.4e-29 | 14 | 141 | 5 | 128 |
NAM 5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 f F+Ptdeel+++yLk+kv gk+ ++++i+e+++++++P+ L + + k++++ +yfF++++ k+at + ++r+tk+ Wk +gk + Bostr.25375s0002.1.p 14 FGFRPTDEELINYYLKNKVIGKTWLVDDIISEINVLNYHPSCLSSlsRNKTNDRVYYFFAPKQYKTATTNMRKRSTKTWNWKISGKVVN 102 78*********************99999***************8433556677788************99******************* PP NAM 92 vlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +++++g+++g ++ Lvf k+ + kge + Wvmhey++ Bostr.25375s0002.1.p 103 IIDESGNKIGERQGLVFEdpKAPKAKGEISPWVMHEYQI 141 ******************44455667889********86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51005 | 36.125 | 10 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 6.5E-17 | 14 | 141 | IPR003441 | NAC domain |
SuperFamily | SSF101941 | 7.19E-34 | 14 | 160 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 335 aa Download sequence Send to blast |
MGRDLPYLST EWRFGFRPTD EELINYYLKN KVIGKTWLVD DIISEINVLN YHPSCLSSLS 60 RNKTNDRVYY FFAPKQYKTA TTNMRKRSTK TWNWKISGKV VNIIDESGNK IGERQGLVFE 120 DPKAPKAKGE ISPWVMHEYQ ITSLPHHNQD SYVICKMFYK GGKKADISNG NNSSEPSQSL 180 VSDSNTIRVT SIPPVFQFEQ PGQENVYGLS ADGLRVPINE QVDLVPPDAF DPNTLFSDYN 240 HPNLQQQTPY NDDFWKNRND YRPKKSLFGI IPDYSDVESI SATSYKGTSS PGDSVGNSNR 300 HFLQTCGDEI LSLSKDIQTS DEPSIIRKTQ ESQLG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-15 | 14 | 160 | 21 | 165 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-15 | 14 | 160 | 21 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-15 | 14 | 160 | 21 | 165 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-15 | 14 | 160 | 21 | 165 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-15 | 14 | 160 | 24 | 168 | NAC domain-containing protein 19 |
3swm_B | 5e-15 | 14 | 160 | 24 | 168 | NAC domain-containing protein 19 |
3swm_C | 5e-15 | 14 | 160 | 24 | 168 | NAC domain-containing protein 19 |
3swm_D | 5e-15 | 14 | 160 | 24 | 168 | NAC domain-containing protein 19 |
3swp_A | 5e-15 | 14 | 160 | 24 | 168 | NAC domain-containing protein 19 |
3swp_B | 5e-15 | 14 | 160 | 24 | 168 | NAC domain-containing protein 19 |
3swp_C | 5e-15 | 14 | 160 | 24 | 168 | NAC domain-containing protein 19 |
3swp_D | 5e-15 | 14 | 160 | 24 | 168 | NAC domain-containing protein 19 |
4dul_A | 5e-15 | 14 | 160 | 21 | 165 | NAC domain-containing protein 19 |
4dul_B | 5e-15 | 14 | 160 | 21 | 165 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25375s0002.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879489.1 | 1e-106 | NAC domain-containing protein 69 isoform X1 | ||||
Swissprot | Q9M126 | 1e-107 | NAC69_ARATH; NAC domain-containing protein 69 | ||||
TrEMBL | D7L2X4 | 1e-122 | D7L2X4_ARALL; Uncharacterized protein | ||||
STRING | Bostr.25375s0002.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1982 | 19 | 71 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G01550.1 | 1e-109 | NAC domain containing protein 69 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25375s0002.1.p |
Publications ? help Back to Top | |||
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