PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25375s0002.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NAC
Protein Properties Length: 335aa    MW: 38104.5 Da    PI: 6.5224
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25375s0002.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM94.81.4e-29141415128
                   NAM   5 frFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdke 91 
                           f F+Ptdeel+++yLk+kv gk+  ++++i+e+++++++P+ L +  + k++++ +yfF++++ k+at + ++r+tk+  Wk +gk  +
  Bostr.25375s0002.1.p  14 FGFRPTDEELINYYLKNKVIGKTWLVDDIISEINVLNYHPSCLSSlsRNKTNDRVYYFFAPKQYKTATTNMRKRSTKTWNWKISGKVVN 102
                           78*********************99999***************8433556677788************99******************* PP

                   NAM  92 vlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                           +++++g+++g ++ Lvf   k+ + kge + Wvmhey++
  Bostr.25375s0002.1.p 103 IIDESGNKIGERQGLVFEdpKAPKAKGEISPWVMHEYQI 141
                           ******************44455667889********86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100536.12510160IPR003441NAC domain
PfamPF023656.5E-1714141IPR003441NAC domain
SuperFamilySSF1019417.19E-3414160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MGRDLPYLST EWRFGFRPTD EELINYYLKN KVIGKTWLVD DIISEINVLN YHPSCLSSLS  60
RNKTNDRVYY FFAPKQYKTA TTNMRKRSTK TWNWKISGKV VNIIDESGNK IGERQGLVFE  120
DPKAPKAKGE ISPWVMHEYQ ITSLPHHNQD SYVICKMFYK GGKKADISNG NNSSEPSQSL  180
VSDSNTIRVT SIPPVFQFEQ PGQENVYGLS ADGLRVPINE QVDLVPPDAF DPNTLFSDYN  240
HPNLQQQTPY NDDFWKNRND YRPKKSLFGI IPDYSDVESI SATSYKGTSS PGDSVGNSNR  300
HFLQTCGDEI LSLSKDIQTS DEPSIIRKTQ ESQLG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A5e-151416021165NO APICAL MERISTEM PROTEIN
1ut4_B5e-151416021165NO APICAL MERISTEM PROTEIN
1ut7_A5e-151416021165NO APICAL MERISTEM PROTEIN
1ut7_B5e-151416021165NO APICAL MERISTEM PROTEIN
3swm_A5e-151416024168NAC domain-containing protein 19
3swm_B5e-151416024168NAC domain-containing protein 19
3swm_C5e-151416024168NAC domain-containing protein 19
3swm_D5e-151416024168NAC domain-containing protein 19
3swp_A5e-151416024168NAC domain-containing protein 19
3swp_B5e-151416024168NAC domain-containing protein 19
3swp_C5e-151416024168NAC domain-containing protein 19
3swp_D5e-151416024168NAC domain-containing protein 19
4dul_A5e-151416021165NAC domain-containing protein 19
4dul_B5e-151416021165NAC domain-containing protein 19
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP). Involved in salt stress response during seed germination and seedling growth. Binds the auxin-responsive IAA30 gene promoter and may serve as a molecular link that interconnects a developmental feedback loop of auxin signaling with a salt signal transduction pathway during seed germination (PubMed:21450938). {ECO:0000269|PubMed:21450938}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25375s0002.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salt stress and abscisic acid (ABA) in roots. {ECO:0000269|PubMed:21450938}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020879489.11e-106NAC domain-containing protein 69 isoform X1
SwissprotQ9M1261e-107NAC69_ARATH; NAC domain-containing protein 69
TrEMBLD7L2X41e-122D7L2X4_ARALL; Uncharacterized protein
STRINGBostr.25375s0002.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM19821971
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G01550.11e-109NAC domain containing protein 69
Publications ? help Back to Top
  1. Liang M, et al.
    Subcellular Distribution of NTL Transcription Factors in Arabidopsis thaliana.
    Traffic, 2015. 16(10): p. 1062-74
    [PMID:26201836]
  2. He L, et al.
    Arabidopsis ANAC069 binds to C[A/G]CG[T/G] sequences to negatively regulate salt and osmotic stress tolerance.
    Plant Mol. Biol., 2017. 93(4-5): p. 369-387
    [PMID:27975189]