PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0532.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 580aa    MW: 65090 Da    PI: 4.4296
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0532.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.42.8e-07423464144
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 
                           r rW++++ el++++++++G++  +   + ++ +Rt++q k+++
  Bostr.25219s0532.1.p 423 RTRWSKQDTELFYEGIREFGSN-LSMLQQLFP-NRTREQMKLKF 464
                           78******************99.*********.******99998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF159632.5E-24416500No hitNo description
Gene3DG3DSA:1.10.10.602.0E-4420465IPR009057Homeodomain-like
SMARTSM007176.7E-6422470IPR001005SANT/Myb domain
SuperFamilySSF466893.81E-8424474IPR009057Homeodomain-like
CDDcd001674.94E-4425465No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MDLDFDDQPS DHAAPAVRAG ARFKPKGRPQ PKKQVSFSTL PTNVANEKLS TQSEDSVSMD  60
ESSTIPSNAL PSETNIPDTG TINQSTIETL SEENVDIFSR GVHWSREASV LCNHVDLGGK  120
RCDYGIEAAS AFLDDPRAKD STFGDFVTPE TGEDEGLDME TLDIVREEGT TSSYGRHTGK  180
FQPKPKLLDT VVEEPEPHYS VDSTGYFSMD TNESELMVNV ESRNGFGTYG HVQEELNIPE  240
APRETVPEME ARNASGAWDN YTGTGEEENC LGNTLEEERS GRERKKGKSK GATARKRKNT  300
SEEAPNKSSE KPEKKFKHSS RRQKRILEKD LLETPDDEIR FLPIRDMLRL VEYKEWMEKK  360
EAKGVDVPLT QESNMNASGS QYSSQGFDAE DEFGMESSEN QETNVVKPDS PVNYQTYMNK  420
TSRTRWSKQD TELFYEGIRE FGSNLSMLQQ LFPNRTREQM KLKFKLEERR YPLKLNDALS  480
SRSKHLTHFQ NVIKKLQQEA AAAKKGEEEE AGAEAETADV PENEEPEKSE ETERASDGIA  540
GVKESDGGNI ENGVRSDGGD ECDDDERDDD FWNSYKSDM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1283297RKKGKSKGATARKRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0532.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0234410.0BT023441.1 Arabidopsis thaliana At4g39160 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006283385.10.0uncharacterized protein LOC17879919
RefseqXP_023635539.10.0uncharacterized protein LOC17879919
RefseqXP_023635540.10.0uncharacterized protein LOC17879919
TrEMBLR0GHJ60.0R0GHJ6_9BRAS; Uncharacterized protein
STRINGBostr.25219s0532.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM51542535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.10.0MYB_related family protein