PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0472.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family C3H
Protein Properties Length: 374aa    MW: 41342.5 Da    PI: 8.2625
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0472.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH33.85.6e-114772126
                          --S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
                          ++++ C+f++rtG C yG++C+++H+
  Bostr.25219s0472.1.p 47 PGERDCQFYLRTGLCGYGSSCRYNHP 72
                          5789*********************9 PP
2zf-CCCH36.77.1e-1292116327
                           S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                           ++ C +f++tG CkyG++Ck++H++
  Bostr.25219s0472.1.p  92 QPDCEYFLKTGACKYGSTCKYHHPK 116
                           789********************96 PP
3zf-CCCH38.71.7e-12136161227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++C++++rtGtC++G  CkF+H++
  Bostr.25219s0472.1.p 136 GEKPCPYYLRTGTCRFGVACKFHHPQ 161
                           689*********************97 PP
4zf-CCCH40.16e-13226249326
                           S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                           +++Crff+ tGtCkyGd Ck++H+
  Bostr.25219s0472.1.p 226 QPECRFFMNTGTCKYGDDCKYNHP 249
                           799********************8 PP
5zf-CCCH291.8e-09270296127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           ++++ C +f+ +G+Ck+G++CkF H++
  Bostr.25219s0472.1.p 270 PGQPACGNFRSYGFCKFGPNCKFDHPM 296
                           57899********************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003562.1E-54673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.3524674IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-84872IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.2E-55073IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-45272IPR000571Zinc finger, CCCH-type
SMARTSM003563.3E-689116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.89689117IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-992116IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.45E-694117IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.8E-495115IPR000571Zinc finger, CCCH-type
SMARTSM003565.6E-6134161IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.939134162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.22E-6134162IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10136161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-5138160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.638223251IPR000571Zinc finger, CCCH-type
SMARTSM003568.4E-7224250IPR000571Zinc finger, CCCH-type
PfamPF006422.1E-10226249IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-6227250IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.7E-5229248IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.83E-5265295IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.892269297IPR000571Zinc finger, CCCH-type
SMARTSM003563.1E-5269296IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-7271296IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 374 aa     Download sequence    Send to blast
MRPMSDTQHV QSSIVSIRSS DKIEDAFRKM KINENGVAES NPYPDRPGER DCQFYLRTGL  60
CGYGSSCRYN HPTHLPQGIT YYKEELPERI GQPDCEYFLK TGACKYGSTC KYHHPKDRNG  120
AEPVLFNVIG LPMRQGEKPC PYYLRTGTCR FGVACKFHHP QPVPQSYVPI MVSPSQGLLP  180
PQGWGTYMAA SNPIYNVKNR PYYSGSSASV PVAVALNRGL PESSDQPECR FFMNTGTCKY  240
GDDCKYNHPG ARISPPPPSL INPFVLPARP GQPACGNFRS YGFCKFGPNC KFDHPMLPYP  300
GLTMSSSLPT PYASPVSTHQ RISPSPSRAD SKSLSSGKPD VKKESSETEK PDYDSEQLNN  360
SEVHDLSENS SSP*
Functional Description ? help Back to Top
Source Description
UniProtPossesses RNA-binding and ribonuclease activities in vitro. {ECO:0000269|PubMed:18582464}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0472.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAB4934340.0AB493434.1 Arabidopsis thaliana At1g04990 mRNA for hypothetical protein, partial cds, clone: RAAt1g04990.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010457569.10.0PREDICTED: zinc finger CCCH domain-containing protein 3-like
SwissprotQ94AD90.0C3H3_ARATH; Zinc finger CCCH domain-containing protein 3
TrEMBLD7KEA00.0D7KEA0_ARALL; Predicted protein
STRINGBostr.25219s0472.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23802675
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G04990.20.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]