PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25219s0353.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | bZIP | ||||||||
Protein Properties | Length: 428aa MW: 47539.4 Da PI: 6.2977 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 30.8 | 6.4e-10 | 212 | 268 | 5 | 61 |
CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklks 61 kr++r NR +A rs +RK +i+eLe+kv++L++e ++L +l l+ l Bostr.25219s0353.1.p 212 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATSLSAQLTLLQRDTNGLSV 268 9*******************************************9999877666655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.5E-15 | 208 | 272 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 10.749 | 210 | 273 | IPR004827 | Basic-leucine zipper domain |
Gene3D | G3DSA:1.20.5.170 | 1.0E-10 | 212 | 266 | No hit | No description |
SuperFamily | SSF57959 | 8.75E-11 | 212 | 263 | No hit | No description |
Pfam | PF00170 | 1.1E-8 | 212 | 264 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14703 | 2.82E-24 | 213 | 262 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 428 aa Download sequence Send to blast |
MDKEKSPAPP SGGLPPPSGR YSTFSPNGSS FAVKAESSFP HLTPAGSSSS DANRFSHDIS 60 RMPDNPPKNL GHRRAHSEIL TLPDDLSFDS DLGVVGAAAD GPTFSDDTDE DLMYMYLDMD 120 KFNSSATSTS QMGEPSEPAW RNELGSTSNL QSTPGSSSER PRIRHQHSQS MDGSTTIKPE 180 MLMSGNEDVS GVDSKKAISA AKLSELALID PKRAKRIWAN RQSAARSKER KMRYIAELER 240 KVQTLQTEAT SLSAQLTLLQ RDTNGLSVEN NELKLRVQTM EQQVHLQDAL NDALKEEVQH 300 LKVLTGQGTS NGASMMNYGS FGPNQQFYPN IQSMHTISAA QQFQQLQIQS QKQQQQQQQQ 360 QQQQQQHQQQ QFQFQQQQLY HLQQQQQQRL QQQEQQSGAS ELRRPIPYPG QKESVASPDL 420 EAPSTKD* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor with an activatory role. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00126 | DAP | Transfer from AT1G06070 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25219s0353.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ419854 | 0.0 | AJ419854.1 Arabidopsis thaliana mRNA for AtbZIP transcription factor. | |||
GenBank | AK229666 | 0.0 | AK229666.1 Arabidopsis thaliana mRNA for bZip transcription factor AtbZip69, complete cds, clone: RAFL19-85-B03. | |||
GenBank | BT028965 | 0.0 | BT028965.1 Arabidopsis thaliana At1g06070 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023645254.1 | 0.0 | probable transcription factor PosF21 | ||||
Refseq | XP_023645255.1 | 0.0 | probable transcription factor PosF21 | ||||
Swissprot | Q04088 | 1e-180 | POF21_ARATH; Probable transcription factor PosF21 | ||||
TrEMBL | R0INM3 | 0.0 | R0INM3_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.25219s0353.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2445 | 27 | 72 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G06070.1 | 0.0 | bZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25219s0353.1.p |
Publications ? help Back to Top | |||
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