PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0269.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 391aa    MW: 44200.8 Da    PI: 6.0759
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0269.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.53e-08335380145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT..TTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg..kgRtlkqcksrwq 45 
                           + +W+t E +  +++ k++G + Wk+I  + +  ++Rt  ++k++++
  Bostr.25219s0269.1.p 335 KVPWSTAETLAVLKGYKKYGAN-WKRIKDENPilERRTNGDIKDKFR 380
                           579*****************99.**********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.3E-8329384IPR009057Homeodomain-like
PROSITE profilePS5129410.855330387IPR017930Myb domain
SuperFamilySSF466897.41E-7332383IPR009057Homeodomain-like
SMARTSM007172.6E-5334385IPR001005SANT/Myb domain
CDDcd116601.12E-11336384No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 391 aa     Download sequence    Send to blast
MALSQWKEAI LEGIFMEIED GVVEEKNLER LENLVEILHK EGSKVPESVK EAFCKVAVEC  60
TVKCLAHERD AKKAYTEAIK SIWLRRIMPL CDKVSCLVTR DLLNSCRRLW TAHSDEKTCK  120
SLMDENTRDK ALVSLRKVVS DLNPNLVSEL NPNMDESEEI KSSEESEETE SMVEAREVEV  180
NHNSMASEAI DKDQESLSDT ELQRPTSGGS KAESLPRQIK TISSAVVDRA LGKLRASKME  240
LLKALEKGGP SNLNNESTTE QENDVANSSG TNTAPRPSLM ERRSTAHTYE WEDSIDDSDG  300
ELGNDGERNN KSKRKRIVVS PLKRNRSSEG ARRKKVPWST AETLAVLKGY KKYGANWKRI  360
KDENPILERR TNGDIKDKFR VEMRREERHP *
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1313334RKRIVVSPLKRNRSSEGARRKK
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0269.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195340.0AY519534.1 Arabidopsis thaliana MYB transcription factor (At1g06910) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006305908.10.0uncharacterized protein LOC17900333
TrEMBLR0GSN90.0R0GSN9_9BRAS; Uncharacterized protein
STRINGBostr.25219s0269.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM149101111
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06910.10.0TRF-like 7