PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0207.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GRAS
Protein Properties Length: 754aa    MW: 83994 Da    PI: 5.7766
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0207.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS376.92.5e-1153787481373
                  GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 
                           l++lL+ cA+avs +d + a+++L +++e++sp g+  +Rla+yf++ L+arla++++++y al++++ts    ++ l+a++++  v+P
  Bostr.25219s0207.1.p 378 LRTLLVLCAQAVSVDDRRTANEMLRQIREHSSPLGNGSERLAHYFANSLEARLAGTGTQIYTALSSKKTS---AADMLKAYHTYMSVCP 463
                           5789**************************************************************9999...9*************** PP

                  GRAS  90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176
                           + k + + aN+ I++ +++++++HiiDf+is+G+QWpaL++ L+ Rp+g+p+lRiTg++ p+ g   +e ++etg+rLa+++++ +vpf
  Bostr.25219s0207.1.p 464 FKKAAIIFANHSIMRFTANANTIHIIDFGISYGFQWPALIHRLSLRPGGSPKLRITGIELPQRGfrPAEGVQETGHRLARYCQRHNVPF 552
                           **************************************************************99************************* PP

                  GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265
                           e+n+ +a+++e++++e+L++++gE ++Vn+ ++ ++llde+v ++s+rd+vL+l+++++P+v++ +    ++n++ F++rf eal +ys
  Bostr.25219s0207.1.p 553 EYNA-IAQKWETIKVEDLKLRQGEFVVVNSLFRFKNLLDETVLVNSPRDAVLNLIRKVNPNVFIPAILSGNYNAPFFVTRFREALFHYS 640
                           ****.7*********************************************************************************** PP

                  GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354
                           a+fd+ ++kl re+e r + E+e+ grei nvvaceg+er+er et+++W++rl +aGF+++pl+++ ++  k+ +++ +++ + v+++
  Bostr.25219s0207.1.p 641 AVFDMCDSKLTREDEMRLMFEKEFYGREIINVVACEGTERVERPETYKQWQARLIRAGFRQLPLEKELMQHLKSKIENGYDKNFDVDQN 729
                           ********************************************************************************999****** PP

                  GRAS 355 sgslvlgWkdrpLvsvSaW 373
                           s++l++gWk+r  ++ S+W
  Bostr.25219s0207.1.p 730 SNWLLQGWKGRIAYASSVW 748
                           ******************* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098567.236352729IPR005202Transcription factor GRAS
PfamPF035148.6E-113378748IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 754 aa     Download sequence    Send to blast
MGSYPDGFPG SMDEFDLPAS NDTLGLANGF YLDEPFLDFA SSDPPQAYPQ NNNKAAAGDL  60
LSSPSDDTDF SDSVLKYISQ VLMEEDMEEK PCMFHDALAL QAAEKSLYEA LGEKHPSSSS  120
AASMDHPEKL ANDSPDGSCS GGAFSDYAST TTTTSSDSHW SVDGLENRSS WLQTPMPSNF  180
VFQSTSRSNS VTSGRGNSAV FGSGFGDSNM FKDSELAMQF KRGVEEASKF LPKSSQLFID  240
VDSYIPGNSG SKENGSEVFV KTEKKDETEH HSSALPPNRL TGKKSHWRDD DEDSVEERSN  300
KQSAVYVEEN ELSEMFDKFL VCGPGKPVCI LDQKFPAEPA KVETTQQIAV QSNGAKIRGK  360
KSAATSQSND SKKETADLRT LLVLCAQAVS VDDRRTANEM LRQIREHSSP LGNGSERLAH  420
YFANSLEARL AGTGTQIYTA LSSKKTSAAD MLKAYHTYMS VCPFKKAAII FANHSIMRFT  480
ANANTIHIID FGISYGFQWP ALIHRLSLRP GGSPKLRITG IELPQRGFRP AEGVQETGHR  540
LARYCQRHNV PFEYNAIAQK WETIKVEDLK LRQGEFVVVN SLFRFKNLLD ETVLVNSPRD  600
AVLNLIRKVN PNVFIPAILS GNYNAPFFVT RFREALFHYS AVFDMCDSKL TREDEMRLMF  660
EKEFYGREII NVVACEGTER VERPETYKQW QARLIRAGFR QLPLEKELMQ HLKSKIENGY  720
DKNFDVDQNS NWLLQGWKGR IAYASSVWVP SSS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A2e-4838575226382Protein SCARECROW
5b3h_A2e-4838575225381Protein SCARECROW
5b3h_D2e-4838575225381Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0207.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAC0224640.0AC022464.4 Genomic sequence for Arabidopsis thaliana BAC F22G5 from chromosome I, complete sequence.
GenBankAK3167930.0AK316793.1 Arabidopsis thaliana AT1G07530 mRNA, complete cds, clone: RAFL05-11-B19.
GenBankCP0026840.0CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006306847.10.0scarecrow-like protein 14
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLR0IBA10.0R0IBA1_9BRAS; Uncharacterized protein
STRINGBostr.25219s0207.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35827189
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]