PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0206.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 623aa    MW: 69135.1 Da    PI: 9.5776
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0206.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.52.6e-07517566147
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqky 47 
                           r +++  E e lv+av++lG+g+W+ +  +     k+Rt  ++k++w ++
  Bostr.25219s0206.1.p 517 RRPFSVAEVEALVQAVERLGTGRWRDVKLRAFdnaKHRTYVDLKDKWKTL 566
                           6789999*******************9988889**************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.864512571IPR017930Myb domain
SMARTSM007177.0E-7516569IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.6E-10517567IPR009057Homeodomain-like
SuperFamilySSF466892.27E-15518599IPR009057Homeodomain-like
CDDcd116601.14E-16518568No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 623 aa     Download sequence    Send to blast
MVLQKRLDYG FNGYEVPHTP RAARSPRKSA FKKKSENHQI SSFDLLAAVA GKLLLEGGNS  60
SSSSNNASGN NEDQCAVKTE ALNGSDLMVE EETTNCDHNN NAERSFFVSE ILPKSHEMQS  120
FNGSPSPLKD FHFGSSSGIT SDSSEKFETQ EVAYEDTNMD NSDCYRSECN DKKSMLGGLN  180
FEAKLSRNVV AKDESHIGRG FRKPIPQNPS VCSDDIDLHG KENDDGENFS ARYRTKSFRS  240
TLRIGERIIS KVLASKYCKV SPKPRDTTVT NSDLDMKHGC YSKKHCLKSL RSERNYPIKK  300
RRYFDACTAS QSEETAKTEG LSGSPRKASG FLSSIACQKQ PALQSRDSHV KLGIKSFRVP  360
ELFIEIPETA TVGSLKRTVL EAVTSILGGG LRIGVLVHGK KVRDDSKMLL QSGISLDTLS  420
DTLGFCLEPK VPPEDSDYVR PCNVPHTLTR CLPSPGKHAK PSNSVESDLD SKPSAPNRAK  480
TIYSRALIPV PPLHAQALTV VPPRKTKRFE VAQRRIRRPF SVAEVEALVQ AVERLGTGRW  540
RDVKLRAFDN AKHRTYVDLK DKWKTLVHTA RISPQQRRGE PVPQELLDRV LTAHAYWSQQ  600
QGKYQLLEGP QKLETTLGLQ TG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A4e-565046034103Telomere binding protein TBP1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to the plant telomeric double-stranded DNA sequences. At least 6 repeats of telomeric sequences are required for binding.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0206.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195350.0AY519535.1 Arabidopsis thaliana MYB transcription factor (At1g07540) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006303609.10.0telomere repeat-binding protein 5
SwissprotQ6R0E30.0TRP5_ARATH; Telomere repeat-binding protein 5
TrEMBLR0GKR50.0R0GKR5_9BRAS; Uncharacterized protein
STRINGBostr.25219s0206.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM32402539
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07540.10.0TRF-like 2