PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.25219s0146.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 301aa    MW: 33506.8 Da    PI: 8.8626
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.25219s0146.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA64.11.6e-20219253135
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 
                           C++C ttkTp+WR+gp+g+ktLCnaCG+++r+ +l
  Bostr.25219s0146.1.p 219 CTHCETTKTPQWREGPNGPKTLCNACGVRFRSGRL 253
                           *******************************9885 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.33E-15212275No hitNo description
SMARTSM004017.2E-20213263IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.102.3E-15217250IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.084217249IPR000679Zinc finger, GATA-type
CDDcd002026.81E-17218267No hitNo description
PROSITE patternPS003440219244IPR000679Zinc finger, GATA-type
PfamPF003202.5E-18219253IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MNWLPEEDFK GLLSDDFFDD LITHLDCPLE DIDTTNGEGD WVAKFQDLEP PPMDMFPTLP  60
SQLTSCANGK APRLGIQNTV PALKQSRSSE ALSGINSTLH QSSSPPDIKV SKLFQSLSPV  120
SVLVNSCDSL SPQNSRSQRL AFPVKGIRSK RKRPTTLRFS YLFPFEPRKA EKLTPGESGS  180
ESYYSSEQHA KKKRKIQLTT HTVSSSFEPS YSDGIVRKCT HCETTKTPQW REGPNGPKTL  240
CNACGVRFRS GRLVPEYRPA SSPTFIPSVH SNSHRKIIEM RRKDDNQFDT SMMHAVISGA  300
*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. May be involved in the regulation of some light-responsive genes (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00130DAPTransfer from AT1G08010Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.25219s0146.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006304051.10.0GATA transcription factor 11
SwissprotQ6DBP81e-176GAT11_ARATH; GATA transcription factor 11
TrEMBLR0IF880.0R0IF88_9BRAS; Uncharacterized protein
STRINGBostr.25219s0146.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM16812589
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G08010.21e-172GATA transcription factor 11