PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.25219s0049.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 102aa MW: 11684.5 Da PI: 10.0657 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 36.8 | 6.8e-12 | 9 | 96 | 3 | 89 |
EE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSS CS B3 3 kvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrs 88 k+ t +d +++++l+lpk+ +e++ ++++++++ + d ++s+ v+l r++++ y++++GW + a +Lk+gD++ ++ ++ + Bostr.25219s0049.1.p 9 KTVTENDLSTKNILILPKDKVENIirstgVPIPRNGIQVEILDN-NNSYWVNL--RQNQSVYYIGSGWGNLRAARNLKTGDVIKLYWQD-T 95 889999***************998**998555678888999995.566669**..999999***********************99533.4 PP E CS B3 89 e 89 + Bostr.25219s0049.1.p 96 K 96 4 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 5.3E-15 | 3 | 96 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-11 | 3 | 94 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.13E-12 | 6 | 101 | No hit | No description |
PROSITE profile | PS50863 | 9.079 | 7 | 101 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.8E-7 | 7 | 101 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.4E-9 | 9 | 97 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 102 aa Download sequence Send to blast |
MDPNMLIRKT VTENDLSTKN ILILPKDKVE NIIRSTGVPI PRNGIQVEIL DNNNSYWVNL 60 RQNQSVYYIG SGWGNLRAAR NLKTGDVIKL YWQDTKFIFT M* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.25219s0049.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_849620.1 | 5e-52 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q8GWU1 | 4e-53 | Y1898_ARATH; B3 domain-containing protein At1g08985 | ||||
TrEMBL | D7KYM6 | 2e-47 | D7KYM6_ARALL; Uncharacterized protein | ||||
STRING | Bostr.25219s0049.1.p | 1e-67 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14170 | 12 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08985.1 | 2e-55 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.25219s0049.1.p |