PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.24513s0191.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | B3 | ||||||||
Protein Properties | Length: 808aa MW: 88697.3 Da PI: 7.8079 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 57.9 | 1.9e-18 | 306 | 401 | 1 | 94 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE- CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkld 85 f+k+l+ sd+++ grlvlpk +ae++ +++ e++ l+++d +g++W+++++y +++s++yvl+ G ++ L++gD+v+F+++ Bostr.24513s0191.1.p 306 FEKTLSASDAGRIGRLVLPKACAEAYfpPISQSEGIPLKIQDVKGKEWTFQFRYwpNNNSRMYVLE-GVTPCIQSMMLQAGDTVTFSRV 393 99**************************666678889*****************89999999***9.********************76 PP SSSEE..EE CS B3 86 grsefelvv 94 + +++l + Bostr.24513s0191.1.p 394 D-PGGKLIM 401 5.6665555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 1.6E-28 | 303 | 413 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.49E-19 | 303 | 401 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.88E-23 | 304 | 401 | No hit | No description |
PROSITE profile | PS50863 | 10.574 | 306 | 407 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 7.3E-16 | 306 | 400 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 5.0E-22 | 306 | 406 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS51050 | 12.962 | 559 | 609 | IPR011124 | Zinc finger, CW-type |
Pfam | PF07496 | 1.3E-8 | 565 | 606 | IPR011124 | Zinc finger, CW-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010030 | Biological Process | positive regulation of seed germination | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:2000034 | Biological Process | regulation of seed maturation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005739 | Cellular Component | mitochondrion | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 808 aa Download sequence Send to blast |
MFEVKMGSKM CMNASCGTTS TVEWKKGWPL RSGLLADLCY RCGSAYESSL FCEQFHKDQS 60 GWRECYLCNK RLHCGCIASK AMIELMDYGG VGCSTCACCH QLNLNKRGEN PGVFSRLPMK 120 PLADRQHVNG ESGMNIDGGR NEADLFSQSQ RCESQPLVMG GDKREEFIPR RGFGKLMNSE 180 NTTTGYRLDA AEMHESSPSQ PSLNMGLAVL PYGPSFSTEG IEGKKHIGAS QSNMVHCSAS 240 NILHKPSKPS ISTPPGASKS AQARIGRPPV EGRGKGHLLP RYWPKYTDKE VQQISGNLNL 300 NIVPLFEKTL SASDAGRIGR LVLPKACAEA YFPPISQSEG IPLKIQDVKG KEWTFQFRYW 360 PNNNSRMYVL EGVTPCIQSM MLQAGDTVTF SRVDPGGKLI MGSRKAANAG DMQGCGLTNC 420 TSTEDTSSSG VTENPPSING SSCPSLIPKE LNGMPDNLSS PYGGSSTKKS ENNGGRIGDD 480 PTRVKEKKRT RTIGTKNKRL LLHSEESMEL RLTWEEAQDL LRPSPSAKPT IVIIEEHEFE 540 EFDEPPVFGK RTIVTTRPSG EQERWASCDD CSKWRRLPVN ALLSLKWTCI DNVWDVSRCS 600 CSAPEENLEG LENVLKVGRD YKKRRTGESQ AAKSEQEPSG LDALASAAVL GDIIGEPEVA 660 TTTRHPRHRA GCSCIVCIQP PSGKGRHKPT CGCNVCSTVK RRFKTLMMRR KKKQLERDGP 720 AAEDKEEKDM EQAESDKNKA ETEVNTARID LNSDPYNKED VEAVAVEKDE SRKIGQCSGV 780 AQNGDVLGVK ELEGEAEKIS EDPRGSR* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 2e-87 | 284 | 414 | 2 | 132 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 699 | 711 | KRRFKTLMMRRKK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor of gene expression involved in embryonic pathways, such as LEC1, ABI3, and FUS3. Repressor of the sugar-inducible genes involved in the seed maturation program in seedlings. Plays an essential role in regulating the transition from seed maturation to seedling growth. Functionally redundant with VAL2/HSL1. {ECO:0000269|PubMed:15894743, ECO:0000269|PubMed:17158584, ECO:0000269|PubMed:17267611}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.24513s0191.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006293696.1 | 0.0 | B3 domain-containing transcription repressor VAL1 | ||||
Swissprot | Q8W4L5 | 0.0 | VAL1_ARATH; B3 domain-containing transcription repressor VAL1 | ||||
TrEMBL | R0HB22 | 0.0 | R0HB22_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.24513s0191.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6923 | 24 | 40 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G30470.1 | 0.0 | high-level expression of sugar-inducible gene 2 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.24513s0191.1.p |