PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.24513s0107.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 251aa    MW: 29280.6 Da    PI: 5.8758
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.24513s0107.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding59.38.7e-191461148
                          TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                          rg+WT+eEd++l+++++++G  +W++ +++ g+ R++k+c++rw +yl
  Bostr.24513s0107.1.p 14 RGPWTPEEDQILINYIHRYGHSNWRALPKHAGLLRCGKSCRLRWINYL 61
                          89******************************99************97 PP
2Myb_DNA-binding52.11.6e-1667112148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           rg++T++E++ ++++++ lG++ W++Ia++++ gRt++++k+ w+++l
  Bostr.24513s0107.1.p  67 RGNFTPQEEQTIINLHESLGNR-WSAIAAKLP-GRTDNEIKNVWHTHL 112
                           89********************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.2E-26564IPR009057Homeodomain-like
PROSITE profilePS5129416.497961IPR017930Myb domain
SuperFamilySSF466894.12E-3110108IPR009057Homeodomain-like
SMARTSM007172.2E-151363IPR001005SANT/Myb domain
PfamPF002491.4E-171461IPR001005SANT/Myb domain
CDDcd001671.87E-111661No hitNo description
PROSITE profilePS5129424.8762116IPR017930Myb domain
Gene3DG3DSA:1.10.10.605.9E-2765117IPR009057Homeodomain-like
SMARTSM007173.2E-1466114IPR001005SANT/Myb domain
PfamPF002492.6E-1567112IPR001005SANT/Myb domain
CDDcd001672.23E-969112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 251 aa     Download sequence    Send to blast
MGRAPCCEKM GMKRGPWTPE EDQILINYIH RYGHSNWRAL PKHAGLLRCG KSCRLRWINY  60
LRPDIKRGNF TPQEEQTIIN LHESLGNRWS AIAAKLPGRT DNEIKNVWHT HLKKRLNKNL  120
NNGGDTKDIN GINKTTHDDK ESMIVDTTSM QQFSNSITTF DISNDNKEEN IMSYDDISAL  180
IDESFWSGVV SEDNSNHNEK KIEDWEGLLD RNIKRYSYNN SELYNDDMEF WFELFTSNRR  240
IEEFSDIPEC *
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-27121175109B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator that regulates freezing tolerance by affecting expression of CBF genes. {ECO:0000269|PubMed:24415840}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.24513s0107.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by salicylic acid (SA), jasmonic acid (JA), salt (NaCl), ethylene and auxin (IAA) (PubMed:16463103). Down-regulated by cold treatment (PubMed:24415840). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:24415840}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5195750.0AY519575.1 Arabidopsis thaliana MYB transcription factor (At2g31180) mRNA, complete cds.
GenBankBT0248530.0BT024853.1 Arabidopsis thaliana At2g31180 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_180676.11e-165myb domain protein 14
SwissprotQ9SJX81e-166MYB14_ARATH; Transcription factor MYB14
TrEMBLA0A178VX211e-163A0A178VX21_ARATH; MYB14AT
STRINGBostr.24513s0107.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.11e-160myb domain protein 14
Publications ? help Back to Top
  1. Chen Y, et al.
    AtMYB14 Regulates Cold Tolerance in Arabidopsis.
    Plant Mol. Biol. Rep., 2013. 31: p. 87-97
    [PMID:24415840]