PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23997s0007.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 444aa    MW: 50071.3 Da    PI: 8.3649
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23997s0007.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding57.23.9e-18112158148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT+eEd +l+++vkq+G ++W+ I++++  gR +kqc++rw+++l
  Bostr.23997s0007.1.p 112 KGQWTAEEDRKLIKLVKQHGDRRWAIISEKFE-GRAGKQCRERWHNHL 158
                           799*****************************.*************97 PP
2Myb_DNA-binding569e-18164206145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           +++W++eE+ ++v+a+++ G++ W+ Ia+ ++ gRt++++k++w+
  Bostr.23997s0007.1.p 164 KDSWSEEEERIFVEAHTRIGNK-WAEIAKLIQ-GRTENSIKNHWN 206
                           679*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129429.004107162IPR017930Myb domain
SuperFamilySSF466891.44E-28109205IPR009057Homeodomain-like
SMARTSM007171.2E-16111160IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.5E-26113166IPR009057Homeodomain-like
PfamPF139216.7E-19115172No hitNo description
CDDcd001677.87E-15115158No hitNo description
PROSITE profilePS5129419.309163213IPR017930Myb domain
SMARTSM007171.8E-14163211IPR001005SANT/Myb domain
CDDcd001671.80E-10166209No hitNo description
Gene3DG3DSA:1.10.10.606.1E-19167211IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0051302Biological Processregulation of cell division
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 444 aa     Download sequence    Send to blast
MEDQRIQEKS LAHCAAPPLT AVERFLNGQK NDTLCFKTQE RSIDQPILKT TRAIEIRNDN  60
KENMMFGPRK EKNLAVNSGN RNVIGEMIVK GATRVYKKST TCKKLPYKNL IKGQWTAEED  120
RKLIKLVKQH GDRRWAIISE KFEGRAGKQC RERWHNHLRP DIKKDSWSEE EERIFVEAHT  180
RIGNKWAEIA KLIQGRTENS IKNHWNATKR RQNGKRKHKR SKNADNSSDI DDLSPSAKRP  240
CILEDYIRSI ENNDKDNGEN IITTGGNNVL STSNLDDGDS TFSLLDEPYD EEIIFLKNIF  300
ANHPVSLDNV GLSQGSDEIT QSSSSGFMFK NPNPKPIVGN HLGTMVTEPA ITSHLASDIY  360
LSDLLNGTAS SSSLSFLSSN NSEHAAVNDL FVPQANSTSE RREMDLIEML SVSSTIVEVD  420
AQVGESFQAK RCLQWQYLKG KVI*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1mse_C3e-451102122104C-Myb DNA-Binding Domain
1msf_C3e-451102122104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1208219KRRQNGKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility (PubMed:23057675, PubMed:24068955). Acts redundantly with MYB119 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5 (PubMed:24068955). {ECO:0000269|PubMed:23057675, ECO:0000269|PubMed:24068955}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23997s0007.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY5196200.0AY519620.1 Arabidopsis thaliana MYB transcription factor (At5g11050) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010453145.10.0PREDICTED: myb-related protein 330-like
SwissprotQ9FY600.0MYB64_ARATH; Transcription factor MYB64
TrEMBLR0FKF00.0R0FKF0_9BRAS; Uncharacterized protein
STRINGBostr.23997s0007.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G11050.10.0myb domain protein 64
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]