PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.23794s0753.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 269aa MW: 30821.8 Da PI: 9.1749 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 162.5 | 1.6e-50 | 15 | 137 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkd 89 lppGfrFhPtdeelvv+yL++kv+g +l++ +vi+e+d++k++PwdLp ++e yfFs+r+ ky++g+r+nr+t sgyWkatg d Bostr.23794s0753.1.p 15 LPPGFRFHPTDEELVVQYLRRKVTGLPLPA-SVIPETDVCKSDPWDLPGD---CDSERYFFSTREAKYPNGNRSNRSTGSGYWKATGID 99 79****************************.99***************44...47899******************************* PP NAM 90 kevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 k++ + k+ +vg+kktLvfykg+ pkg++t+Wv+heyrl Bostr.23794s0753.1.p 100 KQIGK-KKIVVGIKKTLVFYKGKPPKGTRTNWVLHEYRL 137 ***99.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 6.67E-61 | 10 | 160 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 56.866 | 15 | 160 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.3E-27 | 16 | 137 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 269 aa Download sequence Send to blast |
MEKPSSIKNR GVLRLPPGFR FHPTDEELVV QYLRRKVTGL PLPASVIPET DVCKSDPWDL 60 PGDCDSERYF FSTREAKYPN GNRSNRSTGS GYWKATGIDK QIGKKKIVVG IKKTLVFYKG 120 KPPKGTRTNW VLHEYRLVDS QQESSYGQNM NWVLCRVFLK KRSNSNNKRK KDERDELENE 180 KETDRESEEE EKKSSCPIFY DFMRKDKKTR RRRSCDLNLT PATSCCCCFC SSSGSSSSVC 240 SSALTQTSSN DNNHEEISCR KNEFCLFL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 5e-55 | 13 | 163 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 5e-55 | 13 | 163 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 5e-55 | 13 | 163 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 5e-55 | 13 | 163 | 15 | 168 | NO APICAL MERISTEM PROTEIN |
3swm_A | 5e-55 | 13 | 163 | 18 | 171 | NAC domain-containing protein 19 |
3swm_B | 5e-55 | 13 | 163 | 18 | 171 | NAC domain-containing protein 19 |
3swm_C | 5e-55 | 13 | 163 | 18 | 171 | NAC domain-containing protein 19 |
3swm_D | 5e-55 | 13 | 163 | 18 | 171 | NAC domain-containing protein 19 |
3swp_A | 5e-55 | 13 | 163 | 18 | 171 | NAC domain-containing protein 19 |
3swp_B | 5e-55 | 13 | 163 | 18 | 171 | NAC domain-containing protein 19 |
3swp_C | 5e-55 | 13 | 163 | 18 | 171 | NAC domain-containing protein 19 |
3swp_D | 5e-55 | 13 | 163 | 18 | 171 | NAC domain-containing protein 19 |
4dul_A | 5e-55 | 13 | 163 | 15 | 168 | NAC domain-containing protein 19 |
4dul_B | 5e-55 | 13 | 163 | 15 | 168 | NAC domain-containing protein 19 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator of the mannan synthase CSLA9. Recognizes and binds to DNA-specific sequence of CSLA9 promoter. {ECO:0000269|PubMed:24243147}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.23794s0753.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AF325080 | 0.0 | AF325080.1 Arabidopsis thaliana putative NAM (no apical meristem)-like protein (At2g33480) mRNA, complete cds. | |||
GenBank | AF410299 | 0.0 | AF410299.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds. | |||
GenBank | AY093730 | 0.0 | AY093730.1 Arabidopsis thaliana At2g33480/F4P9.25 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010469465.1 | 1e-147 | PREDICTED: NAC domain-containing protein 41-like | ||||
Swissprot | O22798 | 1e-131 | NAC41_ARATH; NAC domain-containing protein 41 | ||||
TrEMBL | R0HQU6 | 1e-129 | R0HQU6_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.23794s0753.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1806 | 27 | 86 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G33480.1 | 1e-109 | NAC domain containing protein 41 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.23794s0753.1.p |
Publications ? help Back to Top | |||
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