PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0746.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 314aa    MW: 34599.9 Da    PI: 7.5092
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0746.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix941.5e-2938131185
              trihelix   1 rWtkqevlaLiearremeerlrrgk.........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcp 80 
                           rWt+qe+l+Li+++r  e+r+rrg+         +++p+W++vs+++r++g++r+p+qC+++w+nl+++ykkike+e++ ++e++s ++
  Bostr.23794s0746.1.p  38 RWTRQEILVLIQGKRVAENRVRRGRaagmalgsgQMEPKWASVSSYCRRHGVNRGPVQCRKRWSNLAGDYKKIKEWESQIKEETESYWV 126
                           8**********************97778888888******************************************************9 PP

              trihelix  81 yfdql 85 
                           + +++
  Bostr.23794s0746.1.p 127 MRNDV 131
                           99886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.605.4E-538103IPR009057Homeodomain-like
PfamPF138376.2E-1338127No hitNo description
PROSITE profilePS500906.438104IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0050777Biological Processnegative regulation of immune response
GO:0071219Biological Processcellular response to molecule of bacterial origin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MALEQLGLGV SAVDGGENSS APSNDGGDDG VKTARLPRWT RQEILVLIQG KRVAENRVRR  60
GRAAGMALGS GQMEPKWASV SSYCRRHGVN RGPVQCRKRW SNLAGDYKKI KEWESQIKEE  120
TESYWVMRND VRREKKLPGF FDKEVYDIVD GGVIPPAVPT LALGLAPASE EGLLSDLDRP  180
NKLNSTPVPK SVSDVLDKEK QEAIGADQGR VKEKHPEGAN VEGGSTSQAS QEERKRKRTS  240
TGEKEEEEEG ETKKMQNQLI EILERNGQLL AAQLEVQNLN LKLDREQRKD HSDSLVAVLN  300
KLADAVAKIA DKL*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional repressor that binds DNA and plays a negative role in regulating microbe-associated molecular patterns-(MAMPs, e.g. flg22, elf18, chitin, and LPS) triggered immunity (PTI) by negatively regulating immune gene expression. {ECO:0000269|PubMed:25770109}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00288DAPTransfer from AT2G33550Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0746.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0653640.0AY065364.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds.
GenBankAY0963890.0AY096389.1 Arabidopsis thaliana unknown protein (At2g33550) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294638.10.0trihelix transcription factor ASR3 isoform X1
SwissprotQ8VZ200.0ASR3_ARATH; Trihelix transcription factor ASR3
TrEMBLR0FXU40.0R0FXU4_9BRAS; Uncharacterized protein
STRINGBostr.23794s0746.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM65572843
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33550.10.0Trihelix family protein
Publications ? help Back to Top
  1. Vidal EA, et al.
    Integrated RNA-seq and sRNA-seq analysis identifies novel nitrate-responsive genes in Arabidopsis thaliana roots.
    BMC Genomics, 2013. 14: p. 701
    [PMID:24119003]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]