PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.23794s0666.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

M-type_MADS

Protein Properties

Length: 173aa MW: 19634.3 Da PI: 9.4768

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.23794s0666.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	60.6	1.8e-19	12	57	4	49
-SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 4 enksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ++ rqvtfskRr+g++KKA+EL +LC+ae +++fs+ gk + y Bostr.23794s0666.1.p 12 QDMNTRQVTFSKRRTGLFKKASELATLCNAELGIVVFSPGGKPFSY 57 56778**********************************9996665 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF55455	7.59E-26	1	71	IPR002100	Transcription factor, MADS-box
PROSITE profile	PS50066	25.02	1	61	IPR002100	Transcription factor, MADS-box
SMART	SM00432	2.1E-32	1	60	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-19	3	23	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.8E-23	12	57	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-19	23	38	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	5.2E-19	38	59	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 173 aa Download sequence Send to blast
MGRRKIKMEM VQDMNTRQVT FSKRRTGLFK KASELATLCN AELGIVVFSP GGKPFSYGKP 60 NLDSVAERFL REYDDSDSGD EEGRGHNRPK LKKMSERLDL LNQEIEAEKK RGEKCQEKLE 120 SAGDERFKKS IGTLTLDELN EYKDQLQTVH GRVQGQANHM QASSCLMFLS RK*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5f28_A	9e-16	1	75	1	74	MEF2C
5f28_B	9e-16	1	75	1	74	MEF2C
5f28_C	9e-16	1	75	1	74	MEF2C
5f28_D	9e-16	1	75	1	74	MEF2C
6byy_A	9e-16	1	69	1	69	MEF2 CHIMERA
6byy_B	9e-16	1	69	1	69	MEF2 CHIMERA
6byy_C	9e-16	1	69	1	69	MEF2 CHIMERA
6byy_D	9e-16	1	69	1	69	MEF2 CHIMERA
6bz1_A	1e-15	1	69	1	69	MEF2 CHIMERA
6bz1_B	1e-15	1	69	1	69	MEF2 CHIMERA
6bz1_C	1e-15	1	69	1	69	MEF2 CHIMERA
6bz1_D	1e-15	1	69	1	69	MEF2 CHIMERA
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Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.23794s0666.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AC004077	0.0	AC004077.3 Arabidopsis thaliana chromosome 2 clone T31E10 map ve016, complete sequence.
GenBank	AC004481	0.0	AC004481.3 Arabidopsis thaliana chromosome 2 clone F13P17 map ve016, complete sequence.
GenBank	CP002685	0.0	CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_180991.1	1e-112	AGAMOUS-like 29
Swissprot	O64703	1e-113	AGL29_ARATH; Agamous-like MADS-box protein AGL29
TrEMBL	A0A178VU29	1e-110	A0A178VU29_ARATH; AGL29
STRING	Bostr.23794s0666.1.p	1e-124	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM86	28	390

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G34440.1	1e-107	AGAMOUS-like 29

Link Out ? help Back to Top
Phytozome	Bostr.23794s0666.1.p

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]