PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.23794s0635.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 847aa MW: 92567.1 Da PI: 6.1834 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.4e-18 | 19 | 77 | 3 | 57 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 k ++t+eq+e+Le+++ ++++ps +r++L +++ +++ +q+kvWFqNrR +ek+ Bostr.23794s0635.1.p 19 KYVRYTPEQVEALERVYTECPKPSSLRRQQLIRECpilsNIEPKQIKVWFQNRRCREKQ 77 5678*****************************************************97 PP | |||||||
2 | START | 190 | 1.2e-59 | 168 | 376 | 2 | 205 |
HHHHHHHHHHHHHHHC-TT-EEEEEXCCTTEEEEEEESSS.SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-SEEEEEEEECTT.. CS START 2 laeeaaqelvkkalaeepgWvkssesengdevlqkfeeskvdsgealrasgvvdmvlallveellddkeqWdetlakaetlevissg.. 88 +aeea++e+++ka+ ++ Wv++ +++g++++ +++ s+++sg a+ra+g+v +++ v+e+l+d++ W ++++ ++tl vi g Bostr.23794s0635.1.p 168 IAEEALAEFLSKATGTAVDWVQMIGMKPGPDSIGIVAISRNCSGMAARACGLVSLEPM-KVAEILKDRPSWLRDCRCVDTLSVIPAGng 255 799*******************************************************.8888888888*****************999 PP EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--....-TTSEE-EESSEEEEEEEECTCEEEEEEEE-EE-- CS START 89 galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppe...sssvvRaellpSgiliepksnghskvtwvehvdlk 173 g+++l++++++a+++l++ Rdf+++Ry+ +l++g++v++++S++s + p+ sss+vRae++pSg+li+p+++g+s +++v+hvdl+ Bostr.23794s0635.1.p 256 GTIELIYTQMYAPTTLAAaRDFWTLRYSTCLEDGSYVVCERSLTSATGGPTgppSSSFVRAEMRPSGFLIRPCEGGGSILHIVDHVDLD 344 ***********************************************9999999*********************************** PP SSXXHHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 174 grlphwllrslvksglaegaktwvatlqrqce 205 ++++++++r+l++s+ + ++k++va+l++ ++ Bostr.23794s0635.1.p 345 AWSVPEVMRPLYESSKILAQKMTVAALRHVRQ 376 ***************************98765 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50071 | 15.321 | 14 | 78 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.7E-15 | 16 | 82 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 8.55E-17 | 18 | 82 | IPR009057 | Homeodomain-like |
CDD | cd00086 | 4.06E-16 | 19 | 79 | No hit | No description |
Pfam | PF00046 | 6.4E-16 | 20 | 77 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 2.0E-18 | 21 | 77 | IPR009057 | Homeodomain-like |
CDD | cd14686 | 5.44E-6 | 71 | 110 | No hit | No description |
PROSITE profile | PS50848 | 27.201 | 158 | 386 | IPR002913 | START domain |
CDD | cd08875 | 1.11E-74 | 162 | 378 | No hit | No description |
Gene3D | G3DSA:3.30.530.20 | 2.8E-22 | 166 | 372 | IPR023393 | START-like domain |
SMART | SM00234 | 4.7E-63 | 167 | 377 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.12E-36 | 167 | 379 | No hit | No description |
Pfam | PF01852 | 6.4E-57 | 168 | 376 | IPR002913 | START domain |
SuperFamily | SSF55961 | 4.94E-6 | 415 | 496 | No hit | No description |
SuperFamily | SSF55961 | 4.94E-6 | 528 | 603 | No hit | No description |
Pfam | PF08670 | 1.2E-48 | 700 | 845 | IPR013978 | MEKHLA |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009855 | Biological Process | determination of bilateral symmetry | ||||
GO:0009944 | Biological Process | polarity specification of adaxial/abaxial axis | ||||
GO:0010072 | Biological Process | primary shoot apical meristem specification | ||||
GO:0080060 | Biological Process | integument development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0008289 | Molecular Function | lipid binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 847 aa Download sequence Send to blast |
MMVHTMNRES PDKGLDSGKY VRYTPEQVEA LERVYTECPK PSSLRRQQLI RECPILSNIE 60 PKQIKVWFQN RRCREKQRKE AARLQTVNRK LNAMNKLLME ENDRLQKQVS HLVYENGHMK 120 HQLHTASGTT TDNSCESVVV SGQQHQQQNP NPQHLQRDAN NPAGLLSIAE EALAEFLSKA 180 TGTAVDWVQM IGMKPGPDSI GIVAISRNCS GMAARACGLV SLEPMKVAEI LKDRPSWLRD 240 CRCVDTLSVI PAGNGGTIEL IYTQMYAPTT LAAARDFWTL RYSTCLEDGS YVVCERSLTS 300 ATGGPTGPPS SSFVRAEMRP SGFLIRPCEG GGSILHIVDH VDLDAWSVPE VMRPLYESSK 360 ILAQKMTVAA LRHVRQIAQE TSGEVQYGGG RQPAVLRTFS QKLCRGFNDA VNGFVDDGWS 420 PMGSDGAEDI TVMINLSPGK FGGSQYGNSF LPSFGSGVLC AKASMLLQNV PPAVLVRFLR 480 EHRSEWADYG VDAYAAASLR ASPFAVPCAR AGGFPSNQVI LPLAQTVEHE ESLEVVRLEG 540 HAYSPEDMGL ARDMYLLQLC SGVDENEVGG CAQLVFAPID ESFADDAPLL PSGFRVIPLE 600 HKSTPNGASA NRTLDLASAL EGSTRQAGEA DPNGCNFRSV LTIAFQFTFD NHSRDSVASM 660 ARQYVRSIVG SIQRVALAIA PRPGSSISPI SVPTSPEALT LVRWISRSYS LHTGADLFGS 720 DSQTSGDTLL HQLWNHTDAI LCCSLKTNAS PVFTFANQTG LDMLETTLVA LQDIMLDKTL 780 DESGRKALCT EFPKIMQQGY AHLPVGVCAS SMGRMVSYEQ ATVWKVLEDD ESNHCLAFMF 840 VNWSFV* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in the determination of adaxial-abaxial polarity in ovule primordium. Specifies adaxial leaf fates. {ECO:0000269|PubMed:11395776, ECO:0000269|PubMed:15328016, ECO:0000269|PubMed:15598805}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.23794s0635.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Repressed by miR165 and miR166. {ECO:0000269|PubMed:14999284, ECO:0000269|PubMed:16033795, ECO:0000269|PubMed:17237362}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ441291 | 0.0 | AJ441291.1 Arabidopsis thaliana mRNA for homeodomain-leucine zipper protein 14 (ATHB-14 gene). | |||
GenBank | AY099791 | 0.0 | AY099791.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds. | |||
GenBank | BT000335 | 0.0 | BT000335.1 Arabidopsis thaliana homeodomain transcription factor (At2g34710) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509720.1 | 0.0 | PREDICTED: homeobox-leucine zipper protein ATHB-14 | ||||
Swissprot | O04291 | 0.0 | ATB14_ARATH; Homeobox-leucine zipper protein ATHB-14 | ||||
TrEMBL | D7LH38 | 0.0 | D7LH38_ARALL; Uncharacterized protein | ||||
STRING | Bostr.23794s0635.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4256 | 26 | 53 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G34710.1 | 0.0 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.23794s0635.1.p |