PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.23794s0571.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 283aa MW: 32662.4 Da PI: 10.437 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 47.7 | 2.9e-15 | 33 | 97 | 32 | 99 |
--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS B3 32 esktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 +++++++ ++g sWev++ +++++ ++ ++GW++Fv++n L + +f++F ++g+++f +v +f++ Bostr.23794s0571.1.p 33 LTRKMKIRAQWGSSWEVEI--CRNPKFyFMEKSGWERFVRDNALGDHEFLTFNHKGEMRF--TVNIFKQ 97 56789**************..9***99555569*********************999999..9999875 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50863 | 10.912 | 4 | 98 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 6.4E-9 | 16 | 98 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.7E-13 | 32 | 97 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 4.12E-13 | 33 | 97 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 6.31E-10 | 33 | 96 | No hit | No description |
Gene3D | G3DSA:2.40.330.10 | 9.4E-15 | 34 | 98 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 9.42E-14 | 185 | 278 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-10 | 187 | 277 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 8.191 | 189 | 282 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.0E-7 | 192 | 282 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 283 aa Download sequence Send to blast |
MARNSDFDRC SEERKREREL LQGSLESSSE NMLTRKMKIR AQWGSSWEVE ICRNPKFYFM 60 EKSGWERFVR DNALGDHEFL TFNHKGEMRF TVNIFKQDDK EMLQPPQSMA FLASSKQGRC 120 SNLFPTTAAE SNGGGNYKRK LNFGKRKAKE SQNSKRTNDK LRPGLKTELS TKNVISVRRD 180 SSGASSSSVA EFTIFINQSY LIFLRFPKSV QKNHMPEQRT IFKIHHLNMK KSWNVVYLVS 240 ETDACFSGVW KRLAHEYPLA VGDTCKFTFL KPEKLILVVS KP* |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 13 | 37 | RKRERELLQGSLESSSENMLTRKMK |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.23794s0571.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT020353 | 3e-89 | BT020353.1 Arabidopsis thaliana At2g35310 gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_020891251.1 | 1e-126 | B3 domain-containing protein At2g35310 isoform X1 | ||||
Swissprot | Q5PNU4 | 1e-123 | Y2531_ARATH; B3 domain-containing protein At2g35310 | ||||
TrEMBL | D7MXL5 | 1e-125 | D7MXL5_ARALL; Transcriptional factor B3 family protein | ||||
STRING | Bostr.23794s0571.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM565 | 21 | 135 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G35310.1 | 1e-117 | B3 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.23794s0571.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|