PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0488.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family B3
Protein Properties Length: 250aa    MW: 28885.8 Da    PI: 7.079
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0488.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3102.13.2e-3237142199
                           EEEE-..-HHHHTT-EE--HHH.HTT........---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeeh........ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81 
                           f+k ltpsdv+k++rlv+pk++ae++        + + e++  l +ede+g+ W+++++y+++s++yvltkGW+++vk+++L++gD+v+
  Bostr.23794s0488.1.p  37 FEKPLTPSDVGKLNRLVIPKQHAERYfplaaaavDAV-EKGLLLCFEDEEGKPWRFRYSYWNSSQSYVLTKGWSRYVKEKHLDAGDVVL 124
                           99*****************************997555.57789********************************************** PP

                           EEE-SSSEE..EEEEE-S CS
                    B3  82 Fkldgrsefelvvkvfrk 99 
                           F++++ ++++++++++r+
  Bostr.23794s0488.1.p 125 FHRHRADGGRFFIGWRRR 142
                           **88779999******97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.102.5E-4031148IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019367.46E-3134142IPR015300DNA-binding pseudobarrel domain
CDDcd100175.37E-2936132No hitNo description
PfamPF023621.4E-2937142IPR003340B3 DNA binding domain
SMARTSM010198.4E-2437143IPR003340B3 DNA binding domain
PROSITE profilePS5086314.05737143IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0080167Biological Processresponse to karrikin
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 250 aa     Download sequence    Send to blast
MSITQYSSDF HYHSLMWQQQ QQHHHQNDVV EEKEALFEKP LTPSDVGKLN RLVIPKQHAE  60
RYFPLAAAAV DAVEKGLLLC FEDEEGKPWR FRYSYWNSSQ SYVLTKGWSR YVKEKHLDAG  120
DVVLFHRHRA DGGRFFIGWR RRGDSSSSPD SYRHHQSNAS LQYYPHAGAQ AVESQRANSK  180
TLRLFGVNME CQLDSDSPEP STPDGSNSNT CTTNHDQFHF YPQQQHYPPP YYMDISFTGD  240
VNQTRRPQG*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A5e-49301421113B3 domain-containing transcription factor NGA1
5os9_B5e-49301421113B3 domain-containing transcription factor NGA1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0488.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1175870.0AK117587.1 Arabidopsis thaliana At2g36080 mRNA for putative RAV2-like DNA binding protein, complete cds, clone: RAFL17-23-G02.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006294872.11e-156B3 domain-containing protein At2g36080
SwissprotQ8GYJ21e-152Y2608_ARATH; B3 domain-containing protein At2g36080
TrEMBLR0HR361e-155R0HR36_9BRAS; Uncharacterized protein
STRINGBostr.23794s0488.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM122028100
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36080.11e-120B3 family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Tanaka M, et al.
    The Minimum Open Reading Frame, AUG-Stop, Induces Boron-Dependent Ribosome Stalling and mRNA Degradation.
    Plant Cell, 2016. 28(11): p. 2830-2849
    [PMID:27760805]