PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.23794s0397.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB_related | ||||||||
Protein Properties | Length: 741aa MW: 81978.9 Da PI: 6.6484 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.1 | 4e-08 | 57 | 99 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT +E+e + a +q G++ +++I ++++ + q++++++ + Bostr.23794s0397.1.p 57 AWTHQEEESFFTALRQVGKN-FEKITSRVQ-SKNKDQVRHYYYRL 99 6*****************99.*********.***********976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.2E-10 | 49 | 104 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.9E-5 | 52 | 102 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 13.52 | 53 | 104 | IPR017884 | SANT domain |
SMART | SM00717 | 5.1E-6 | 54 | 102 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.21E-5 | 57 | 100 | No hit | No description |
Pfam | PF00249 | 3.1E-6 | 57 | 99 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 741 aa Download sequence Send to blast |
MLKPFAHYCE MQAEQKPEGP IDEGRISNQN SNPNLLSSAS ASVAQFPAKK PTRQWAAWTH 60 QEEESFFTAL RQVGKNFEKI TSRVQSKNKD QVRHYYYRLV RRMNKLLGPE LSLDAKNPKD 120 TNAAMLRWWS LLEKYSCKAS KLHLKPRRFK LFIEALEHQL LKDRRKSIRK RACHGENFSS 180 ASLRNISSHS RERGLDNRPF KLILSDGQNV KKLGSGRAST KHGESLGVNL GDEKEDTAFG 240 RGGRQRRKQG YRKWEKAVMD GVSLVADAAE HLERTSICKD MDDQKDLGST RYLTGKSPLS 300 LCSSGAVPLS DANMQFSAKL KLQLFPIDEC TRRSLEMDKH NPHLELTLSN RKKLSSVLEH 360 LNRKWGSSSC ATGELMLFPY NARKETVTCH QRWTHDSFLS AAEVYSMVGS PSVFRLRYGW 420 FVHDASGSFI SQVPTSDPCP SLEDDMNVDG VNEVNMLLTE SGPLSVHSTA EQPTSVEPSL 480 GLVCASGETH DRPAESRDDY EPASATMTPL EHLSSGNAQS AGEWADSLTN ISIGDLLSEV 540 PDDIDSDGVD PPATEGSHCL LRDVPFASDS FDAAIAAHIL RHQNKPSALL PLTSGSSSLW 600 DDEETRDAFS FQKNRLADSS KLANVASPGG VGRVNGKPSQ LVEASVDEKL PDHVEPMEEG 660 PTDPHTMDSP GKTHCGLADI YWPDSLGPLD LDIRSSKYTE DLILSESLGG LSRLIATSLD 720 AFQNCSLFGF DNKKDKSNMV * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.23794s0397.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY064068 | 0.0 | AY064068.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds. | |||
GenBank | AY096376 | 0.0 | AY096376.1 Arabidopsis thaliana unknown protein (At2g36960) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509412.2 | 0.0 | PREDICTED: TSL-kinase interacting protein 1 | ||||
Swissprot | Q8LJT8 | 0.0 | TKI1_ARATH; TSL-kinase interacting protein 1 | ||||
TrEMBL | D7LJ99 | 0.0 | D7LJ99_ARALL; Tsl-kinase interacting protein 1 | ||||
STRING | Bostr.23794s0397.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9633 | 21 | 24 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G36960.1 | 0.0 | TSL-kinase interacting protein 1 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.23794s0397.1.p |