PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0389.4.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB_related
Protein Properties Length: 379aa    MW: 43010.9 Da    PI: 6.8946
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0389.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding22.82.1e-07262309448
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 
                           WT +E  +lvd++  +G g W+ I + +     +Rt+ +++++w+++l
  Bostr.23794s0389.4.p 262 WTVDEVMKLVDGISHFGVGKWTDIKNLFFhsaAHRTPIDIRDKWRNLL 309
                           **********************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.649254313IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.6E-12254316IPR009057Homeodomain-like
SMARTSM007172.4E-7258311IPR001005SANT/Myb domain
CDDcd116602.75E-19260310No hitNo description
SuperFamilySSF466892.02E-16260323IPR009057Homeodomain-like
PfamPF139213.8E-7262316No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 379 aa     Download sequence    Send to blast
MSDMKHFLME PKHDNTAVDS FLGLGMENMG LSSTMEEFSH GFDFSFLPDY GGLDSCSTQD  60
VEAGLKFEIL DGFLDEVDEV EDIYASHDLS SIGNHILPET EVKKISELDG ETYGLTNFRS  120
ESYSPGISGS IGLSEWSKET IPLAESQNVS SEKLKDSLDS NESEDDKKPL STFIGSWVKR  180
GKNRKKNLLN TAYSRLDSSG ERMSCVSYDF RPRKGPMKKY MHTSTENTFS DDQLTSSESE  240
DDISVTKTSR TRSDRRKHQR MWTVDEVMKL VDGISHFGVG KWTDIKNLFF HSAAHRTPID  300
IRDKWRNLLK ASYNDKHNDG EAEERRKSVA RPIPKDVLHR VRELASLHPY PFSKSSCFVH  360
DSSRSRSTSK KKKKKKRS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2juh_A5e-13247341590Telomere binding protein TBP1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370376KKKKKKR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0389.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304480.0AK230448.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-48-F14.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010516938.20.0PREDICTED: uncharacterized protein LOC104792482 isoform X2
RefseqXP_010516939.10.0PREDICTED: uncharacterized protein LOC104792482 isoform X4
RefseqXP_010516940.10.0PREDICTED: uncharacterized protein LOC104792482 isoform X4
TrEMBLA0A178VNS90.0A0A178VNS9_ARATH; TRFL8
TrEMBLF4IPY70.0F4IPY7_ARATH; TRF-like 8
STRINGBostr.23794s0389.1.p0.0(Boechera stricta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17460.11e-20TRF-like 3