PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.23794s0389.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 379aa MW: 43010.9 Da PI: 6.8946 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.8 | 2.1e-07 | 262 | 309 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT +E +lvd++ +G g W+ I + + +Rt+ +++++w+++l Bostr.23794s0389.3.p 262 WTVDEVMKLVDGISHFGVGKWTDIKNLFFhsaAHRTPIDIRDKWRNLL 309 **********************************************96 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 14.649 | 254 | 313 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 6.6E-12 | 254 | 316 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 2.4E-7 | 258 | 311 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 2.75E-19 | 260 | 310 | No hit | No description |
SuperFamily | SSF46689 | 2.02E-16 | 260 | 323 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 3.8E-7 | 262 | 316 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 379 aa Download sequence Send to blast |
MSDMKHFLME PKHDNTAVDS FLGLGMENMG LSSTMEEFSH GFDFSFLPDY GGLDSCSTQD 60 VEAGLKFEIL DGFLDEVDEV EDIYASHDLS SIGNHILPET EVKKISELDG ETYGLTNFRS 120 ESYSPGISGS IGLSEWSKET IPLAESQNVS SEKLKDSLDS NESEDDKKPL STFIGSWVKR 180 GKNRKKNLLN TAYSRLDSSG ERMSCVSYDF RPRKGPMKKY MHTSTENTFS DDQLTSSESE 240 DDISVTKTSR TRSDRRKHQR MWTVDEVMKL VDGISHFGVG KWTDIKNLFF HSAAHRTPID 300 IRDKWRNLLK ASYNDKHNDG EAEERRKSVA RPIPKDVLHR VRELASLHPY PFSKSSCFVH 360 DSSRSRSTSK KKKKKKRS* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 5e-13 | 247 | 341 | 5 | 90 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
---|---|---|---|
No. | Start | End | Sequence |
1 | 370 | 376 | KKKKKKR |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.23794s0389.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AK230448 | 0.0 | AK230448.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-48-F14. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516938.2 | 0.0 | PREDICTED: uncharacterized protein LOC104792482 isoform X2 | ||||
Refseq | XP_010516939.1 | 0.0 | PREDICTED: uncharacterized protein LOC104792482 isoform X4 | ||||
Refseq | XP_010516940.1 | 0.0 | PREDICTED: uncharacterized protein LOC104792482 isoform X4 | ||||
TrEMBL | A0A178VNS9 | 0.0 | A0A178VNS9_ARATH; TRFL8 | ||||
TrEMBL | F4IPY7 | 0.0 | F4IPY7_ARATH; TRF-like 8 | ||||
STRING | Bostr.23794s0389.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G17460.1 | 1e-20 | TRF-like 3 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.23794s0389.3.p |