PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.23794s0389.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB_related | ||||||||
Protein Properties | Length: 431aa MW: 48987.6 Da PI: 6.5167 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 22.6 | 2.5e-07 | 314 | 361 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48 WT +E +lvd++ +G g W+ I + + +Rt+ +++++w+++l Bostr.23794s0389.1.p 314 WTVDEVMKLVDGISHFGVGKWTDIKNLFFhsaAHRTPIDIRDKWRNLL 361 **********************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 8.0E-12 | 306 | 368 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 14.649 | 306 | 365 | IPR017930 | Myb domain |
SMART | SM00717 | 2.4E-7 | 310 | 363 | IPR001005 | SANT/Myb domain |
CDD | cd11660 | 3.95E-19 | 312 | 362 | No hit | No description |
SuperFamily | SSF46689 | 2.47E-16 | 312 | 375 | IPR009057 | Homeodomain-like |
Pfam | PF13921 | 4.6E-7 | 314 | 368 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 431 aa Download sequence Send to blast |
MRSSFVNLAL FKHGLDLNVD FWDARTPDFP ETFAGLKCES VDENVCHSNE YKMSDMKHFL 60 MEPKHDNTAV DSFLGLGMEN MGLSSTMEEF SHGFDFSFLP DYGGLDSCST QDVEAGLKFE 120 ILDGFLDEVD EVEDIYASHD LSSIGNHILP ETEVKKISEL DGETYGLTNF RSESYSPGIS 180 GSIGLSEWSK ETIPLAESQN VSSEKLKDSL DSNESEDDKK PLSTFIGSWV KRGKNRKKNL 240 LNTAYSRLDS SGERMSCVSY DFRPRKGPMK KYMHTSTENT FSDDQLTSSE SEDDISVTKT 300 SRTRSDRRKH QRMWTVDEVM KLVDGISHFG VGKWTDIKNL FFHSAAHRTP IDIRDKWRNL 360 LKASYNDKHN DGEAEERRKS VARPIPKDVL HRVRELASLH PYPFSKSSCF VHDSSRSRST 420 SKKKKKKKRS * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2juh_A | 3e-13 | 299 | 393 | 5 | 90 | Telomere binding protein TBP1 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 422 | 428 | KKKKKKR |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.23794s0389.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK230448 | 0.0 | AK230448.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-48-F14. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010516938.2 | 0.0 | PREDICTED: uncharacterized protein LOC104792482 isoform X2 | ||||
Refseq | XP_010516939.1 | 0.0 | PREDICTED: uncharacterized protein LOC104792482 isoform X4 | ||||
Refseq | XP_010516940.1 | 0.0 | PREDICTED: uncharacterized protein LOC104792482 isoform X4 | ||||
TrEMBL | A0A178VNS9 | 0.0 | A0A178VNS9_ARATH; TRFL8 | ||||
TrEMBL | F4IPY7 | 0.0 | F4IPY7_ARATH; TRF-like 8 | ||||
STRING | Bostr.23794s0389.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM9200 | 19 | 27 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G17460.1 | 2e-20 | TRF-like 3 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.23794s0389.1.p |