PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.23794s0312.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | GRAS | ||||||||
Protein Properties | Length: 726aa MW: 82061.9 Da PI: 6.8614 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 378.9 | 6.2e-116 | 351 | 720 | 1 | 374 |
GRAS 1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsP 89 l++lLl+cA+av+++d ++a +lL++++++++p gd +qRla++f+++L+arla+++s++yk + +++ s + +l+a++lf ++P Bostr.23794s0312.1.p 351 LRSLLLHCAQAVAADDRRCAGQLLKQIRQHSTPFGDGNQRLAHCFANGLEARLAGTGSQIYKEIVSKPRS---AAAVLKAHQLFLACCP 436 689***************************************************************9999...999************* PP GRAS 90 ilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpf 176 + k+s++++N++I + v +++rvH+iDf+i +G+QWp+L++ ++ g+p++RiTg++ p++g ++++eetg+rLa +A+++gvpf Bostr.23794s0312.1.p 437 FRKLSYFITNKTIRDLVGNSQRVHVIDFGILYGFQWPTLIHRFSI--YGSPKVRITGIEFPQPGfrPAQRVEETGQRLAAYAKHFGVPF 523 ********************************************8..8***************9************************* PP GRAS 177 efnvlvakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyys 265 e+++ +ak++++++le+L+++++E+++Vn+ ++ ++l+desv++es+rd+vL+l+ +++P+++v+ + +n++ F++rf eal ++s Bostr.23794s0312.1.p 524 EYKA-IAKKWDAIQLEDLDIDRDEVIIVNCLYRAENLHDESVKVESCRDTVLNLIGKINPDLFVFGIVNGAYNAPFFVTRFREALFHFS 611 ****.7*********************************************************************************** PP GRAS 266 alfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveee 354 ++fd+le+ +pre+eer+++E e++gre+ nv+aceg er+er et+++W+ r +++G+ +vp++ +++k+a + +++++ + + ++++ Bostr.23794s0312.1.p 612 SIFDMLETIVPREDEERMFLEMEVFGREALNVIACEGWERVERPETYKQWHIRAMRSGLVQVPFDPSIMKTALHKVHTFYHKDFVIDQD 700 ********************************************************************************888****** PP GRAS 355 sgslvlgWkdrpLvsvSaWr 374 + +l++gWk+r+++++S+W+ Bostr.23794s0312.1.p 701 NRWLLQGWKGRTVMALSVWK 720 *******************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 62.098 | 325 | 700 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 2.2E-113 | 351 | 720 | IPR005202 | Transcription factor GRAS |
Sequence ? help Back to Top |
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Protein Sequence Length: 726 aa Download sequence Send to blast |
MITEPGLIGI SGAINRNRLP DQSTSLLPIH TFTPVTLYDG FNYNLSSDHR NTVAERPENS 60 VFIREVEEEE EDPADAFDFS DAVLGYISQM LNEEDMDDKV CMLQESLDLE AAERSLYEAI 120 GKKYPPSPDR NLASFAERNG ENLDRVVPGN YTGGDCTGFW NGGIKPLSGG FTLDFRNPQS 180 RRSSVQSVPQ SNGLVTIYGD ETDESSKNSL YTDSNRKSNQ SVWLFRRGIE EASRFLPEQN 240 ELIVNFREES CRTKGRKNSS RDEICVEEER SSKLPAVFGE DILRSDVVDK ILVHVPGEDS 300 MKEFNALREV LKKGVDKKKA SVAQGGKRRA RGRGRGRGGG GHNGKKEVVD LRSLLLHCAQ 360 AVAADDRRCA GQLLKQIRQH STPFGDGNQR LAHCFANGLE ARLAGTGSQI YKEIVSKPRS 420 AAAVLKAHQL FLACCPFRKL SYFITNKTIR DLVGNSQRVH VIDFGILYGF QWPTLIHRFS 480 IYGSPKVRIT GIEFPQPGFR PAQRVEETGQ RLAAYAKHFG VPFEYKAIAK KWDAIQLEDL 540 DIDRDEVIIV NCLYRAENLH DESVKVESCR DTVLNLIGKI NPDLFVFGIV NGAYNAPFFV 600 TRFREALFHF SSIFDMLETI VPREDEERMF LEMEVFGREA LNVIACEGWE RVERPETYKQ 660 WHIRAMRSGL VQVPFDPSIM KTALHKVHTF YHKDFVIDQD NRWLLQGWKG RTVMALSVWK 720 PDSKA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3g_A | 9e-44 | 357 | 723 | 25 | 382 | Protein SCARECROW |
5b3h_A | 1e-43 | 357 | 723 | 24 | 381 | Protein SCARECROW |
5b3h_D | 1e-43 | 357 | 723 | 24 | 381 | Protein SCARECROW |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 328 | 337 | RARGRGRGRG |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor involved in plant development. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.23794s0312.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC004684 | 0.0 | AC004684.3 Arabidopsis thaliana chromosome 2 clone F13M22 map ve018, complete sequence. | |||
GenBank | CP002685 | 0.0 | CP002685.1 Arabidopsis thaliana chromosome 2, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006296472.1 | 0.0 | scarecrow-like protein 9 isoform X1 | ||||
Swissprot | O80933 | 0.0 | SCL9_ARATH; Scarecrow-like protein 9 | ||||
TrEMBL | R0HVC0 | 0.0 | R0HVC0_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.23794s0312.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM358 | 27 | 189 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 0.0 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.23794s0312.1.p |