PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.23794s0182.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family NF-YB
Protein Properties Length: 142aa    MW: 15180.9 Da    PI: 4.5966
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.23794s0182.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB182.43.7e-5719116198
                 NF-YB   1 vreqdrflPianvsrimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkk 89 
                           vreqdr+lPian+srimkk+lP n+ki+kdak+tvqecvsefisf+tseasdkcq+ekrkt+ngddllwa+atlGfedy+eplk+yl++
  Bostr.23794s0182.1.p  19 VREQDRYLPIANISRIMKKALPPNGKIGKDAKDTVQECVSEFISFITSEASDKCQKEKRKTVNGDDLLWAMATLGFEDYLEPLKIYLAR 107
                           69*************************************************************************************** PP

                 NF-YB  90 yrelegekk 98 
                           yreleg++k
  Bostr.23794s0182.1.p 108 YRELEGDNK 116
                           ******975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.107.7E-5417129IPR009072Histone-fold
SuperFamilySSF471132.02E-4122133IPR009072Histone-fold
PfamPF008081.4E-272589IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
PRINTSPR006154.7E-215371No hitNo description
PROSITE patternPS0068505672IPR003956Transcription factor, NFYB/HAP3, conserved site
PRINTSPR006154.7E-217290No hitNo description
PRINTSPR006154.7E-2191109No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009414Biological Processresponse to water deprivation
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 142 aa     Download sequence    Send to blast
MADTPSSPAG DGGESGGSVR EQDRYLPIAN ISRIMKKALP PNGKIGKDAK DTVQECVSEF  60
ISFITSEASD KCQKEKRKTV NGDDLLWAMA TLGFEDYLEP LKIYLARYRE LEGDNKGSGK  120
SGDGSNRDAG GGVSGEEMPS W*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1n1j_A2e-4818110193NF-YB
4awl_B2e-4818110294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
4csr_A2e-4818110294NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT BETA
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtComponent of the NF-Y/HAP transcription factor complex. The NF-Y complex stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00300DAPTransfer from AT2G38880Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.23794s0182.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0885540.0AY088554.1 Arabidopsis thaliana clone 7805 mRNA, complete sequence.
GenBankBT0042660.0BT004266.1 Arabidopsis thaliana clone RAFL15-29-F19 (R20926) putative CCAAT-binding transcription factor subunit (At2g38880) mRNA, complete cds.
GenBankBT0055360.0BT005536.1 Arabidopsis thaliana clone U20926 putative CCAAT-binding transcription factor subunit (At2g38880) mRNA, complete cds.
GenBankDQ3333050.0DQ333305.1 Arabidopsis thaliana transcription factor subunit NF-YB1 mRNA, complete cds.
GenBankY137230.0Y13723.1 Arabidopsis thaliana mRNA for Hap3a transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_001031511.11e-100nuclear factor Y, subunit B1
RefseqNP_030436.11e-100nuclear factor Y, subunit B1
RefseqNP_850304.21e-100nuclear factor Y, subunit B1
RefseqXP_002879771.11e-100nuclear transcription factor Y subunit B-1
SwissprotQ9SLG01e-101NFYB1_ARATH; Nuclear transcription factor Y subunit B-1
TrEMBLA6XB862e-98A6XB86_ARATH; Transcription factor subunit NF-YB1
TrEMBLD7LCC92e-98D7LCC9_ARALL; Uncharacterized protein
STRINGscaffold_402629.13e-99(Arabidopsis lyrata)
STRINGBostr.23794s0182.1.p3e-99(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM14802794
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38880.55e-91nuclear factor Y, subunit B1