PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.23794s0149.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | AP2 | ||||||||
Protein Properties | Length: 324aa MW: 36579.5 Da PI: 9.3798 | ||||||||
Description | AP2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 55.7 | 1.2e-17 | 106 | 155 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 s+y+GV++++++grW+++I+d + k+++lg f+ta+ Aa+a+++a+ +++g Bostr.23794s0149.1.p 106 SHYRGVTFYRRTGRWESHIWD------CgKQVYLGGFDTAYTAARAYDRAAIRFRG 155 79*******************......55************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF54171 | 5.17E-15 | 106 | 163 | IPR016177 | DNA-binding domain |
Pfam | PF00847 | 1.4E-9 | 106 | 155 | IPR001471 | AP2/ERF domain |
CDD | cd00018 | 1.66E-23 | 107 | 162 | No hit | No description |
Gene3D | G3DSA:3.30.730.10 | 1.9E-16 | 107 | 162 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 7.6E-29 | 107 | 169 | IPR001471 | AP2/ERF domain |
PROSITE profile | PS51032 | 16.766 | 107 | 163 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 324 aa Download sequence Send to blast |
MLYLSLGILS THNEDEDCKV PTSIFNQEEE NSINPSNNNL SLITFGILKR KEDVEVLPIP 60 PPPPPPESEL SSAGSEWLNL SSMQRNKQEM LVMKKKSRRG PRSRSSHYRG VTFYRRTGRW 120 ESHIWDCGKQ VYLGGFDTAY TAARAYDRAA IRFRGLQADI NFIVDDYKQD IEKMKSLSKE 180 EFVQTLRRAS ASLARGGSKY KNSYMKNDHT HLFQNREWNA AAAKCNEMRK IEGDIKLDAN 240 NKGNEHNDLE LSLGISSTSK NITLNPADYF MGLNRSVTSL HRKPLPVYLP ITEMKPLKTV 300 VASSGFPFIA MINSSSLSTC FDP* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Repressor of flowering. {ECO:0000250, ECO:0000269|PubMed:14573523}. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.23794s0149.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Repressed by miR172 after photoperiod changement. {ECO:0000269|PubMed:14573523}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY576276 | 0.0 | AY576276.1 Arabidopsis thaliana AP2 domain transcription factor (SNZ) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010509043.1 | 0.0 | PREDICTED: AP2-like ethylene-responsive transcription factor SNZ isoform X2 | ||||
Swissprot | Q6PV67 | 0.0 | SNZ_ARATH; AP2-like ethylene-responsive transcription factor SNZ | ||||
TrEMBL | D7LCG4 | 0.0 | D7LCG4_ARALL; Uncharacterized protein | ||||
STRING | Bostr.23794s0149.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10858 | 18 | 32 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G39250.1 | 1e-163 | AP2 family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.23794s0149.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|