PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Bostr.23151s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
|
||||||||
Family | G2-like | ||||||||
Protein Properties | Length: 415aa MW: 46507.6 Da PI: 6.1992 | ||||||||
Description | G2-like family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | G2-like | 104.7 | 5.3e-33 | 232 | 286 | 1 | 55 |
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 k+r+rWtpeLHe+Fveav+qLGGs++AtPk++l+l++ +gLt++hvkSHLQkYR+ Bostr.23151s0001.1.p 232 KQRMRWTPELHEAFVEAVNQLGGSDRATPKAVLKLLNNPGLTIYHVKSHLQKYRT 286 79****************************************************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 10.897 | 229 | 289 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 1.45E-17 | 230 | 286 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 1.4E-30 | 230 | 288 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 3.9E-23 | 232 | 286 | IPR006447 | Myb domain, plants |
Pfam | PF00249 | 8.0E-11 | 234 | 285 | IPR001005 | SANT/Myb domain |
Pfam | PF14379 | 9.0E-22 | 320 | 366 | IPR025756 | MYB-CC type transcription factor, LHEQLE-containing domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 415 aa Download sequence Send to blast |
MTLANDFGYS TAMSSSFSAL HTTVEDRYHK LPNSFWVSSG QELMNNPVPC QTVSGGNSGG 60 YLFSSSSGFC NVSTASPHGR NSQTRPHVST VPRERLAMQN CPLEAQSPSL INHHPQEFTD 120 PFQEFFDFSD HVSVPNLQAE SSGVRMVSSV ELNKKSEWQD WADQLISVDD GSEPNWSELL 180 GDLSSHNPNS KIPTPFSDVP RQEVKANQQH QIVSSEEQLG GRNSSSSVAT SKQRMRWTPE 240 LHEAFVEAVN QLGGSDRATP KAVLKLLNNP GLTIYHVKSH LQKYRTARYK PETSEVTGEP 300 QEKKMTSIED IKSLDMKTSV EITQALRLQM EVQKRLHEQL EIQRTLQLQI EKQGRYLQMM 360 FEKQQKIQEN KSSSSEASPK QFNTTSAEVE LGFDTQTVDQ TESPSVSRKR VRED* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j4k_A | 2e-27 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j4k_B | 2e-27 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_A | 2e-27 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_C | 2e-27 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_D | 2e-27 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_F | 2e-27 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_H | 2e-27 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
6j5b_J | 2e-27 | 232 | 290 | 2 | 60 | Protein PHOSPHATE STARVATION RESPONSE 1 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor acting as central integrator of phosphate starvation responses (PubMed:20838596). Regulates FER1 expression upon phosphate starvation, linking iron and phosphate homeostasis (PubMed:23788639). {ECO:0000269|PubMed:20838596, ECO:0000269|PubMed:23788639}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00532 | DAP | Transfer from AT5G29000 | Download |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Bostr.23151s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not up-regulated by Pi starvation. {ECO:0000269|PubMed:26586833}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT002344 | 0.0 | BT002344.1 Arabidopsis thaliana clone C104936 unknown protein (At5g29000) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010494125.1 | 0.0 | PREDICTED: protein PHR1-LIKE 1-like | ||||
Swissprot | Q8GUN5 | 0.0 | PHL1_ARATH; Protein PHR1-LIKE 1 | ||||
TrEMBL | A0A178ULC5 | 0.0 | A0A178ULC5_ARATH; PHL1 | ||||
STRING | Bostr.23151s0001.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM856 | 27 | 117 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G29000.2 | 0.0 | G2-like family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Bostr.23151s0001.1.p |
Publications ? help Back to Top | |||
---|---|---|---|
|