PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0362.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family GATA
Protein Properties Length: 138aa    MW: 15076.1 Da    PI: 10.7174
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0362.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA56.44.1e-183064135
                  GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                          C+ Cgt+kTplWR gp g+k+LCnaCG+++rkk++
  Bostr.22252s0362.1.p 30 CTICGTSKTPLWRGGPAGPKSLCNACGIRNRKKRR 64
                          999*****************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011412.5052460IPR000679Zinc finger, GATA-type
SMARTSM004015.1E-142476IPR000679Zinc finger, GATA-type
SuperFamilySSF577165.23E-132676No hitNo description
Gene3DG3DSA:3.30.50.101.1E-142864IPR013088Zinc finger, NHR/GATA-type
CDDcd002021.31E-122973No hitNo description
PfamPF003204.0E-163064IPR000679Zinc finger, GATA-type
PROSITE patternPS0034403055IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 138 aa     Download sequence    Send to blast
MKTSVDAIEE HSSSSSNSNG GGISNEKKSC TICGTSKTPL WRGGPAGPKS LCNACGIRNR  60
KKRRTLISNR SEDKKKKKNH TKNSKFGDSL KQRLMELGRE VMLQRSTAEN QRRNKLGEEE  120
QAAVLLMALS YASSVYA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16177KRRTLISNRSEDKKKKK
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0362.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0639261e-147AY063926.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds.
GenBankAY0912501e-147AY091250.1 Arabidopsis thaliana unknown protein (At3g06740) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566290.12e-79GATA transcription factor 15
SwissprotQ8LG102e-80GAT15_ARATH; GATA transcription factor 15
TrEMBLD7L5Z27e-77D7L5Z2_ARALL; Uncharacterized protein
STRINGBostr.22252s0362.1.p5e-96(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM50502652
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-71GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]