PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.22252s0262.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | CO-like | ||||||||
Protein Properties | Length: 371aa MW: 40701.1 Da PI: 6.4061 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 19.6 | 1.9e-06 | 4 | 44 | 5 | 39 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htv 39 +C+ ++e++ +C+++ +lC +C + H+ H++ Bostr.22252s0262.2.p 4 MCDFCSEQRSMVYCRSDAACLCLSCDRSVHSAnalskrHSR 44 6*****************************65677777765 PP | |||||||
2 | zf-B_box | 23.9 | 8.5e-08 | 46 | 95 | 4 | 40 |
zf-B_box 4 rkCpeHeekelqlfCedCqqllCedClleeHkg.............Htvv 40 +C++++ ++++ C + ++ lC++C ++H++ H+++ Bostr.22252s0262.2.p 46 LVCERCNAQPATVRCVEERVSLCQNCDWSGHNNnnssssssspqqqHKRQ 95 68*****************************8877777777777777765 PP | |||||||
3 | CCT | 60.4 | 6.1e-21 | 313 | 356 | 1 | 44 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 R++a++RYkeK+k RkF+K++rY+sRKa+A+ R RvKGrFvk+ Bostr.22252s0262.2.p 313 RNNAVMRYKEKKKARKFDKRVRYASRKARADVRRRVKGRFVKAG 356 99***************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.741 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.79E-6 | 4 | 47 | No hit | No description |
SMART | SM00336 | 1.2E-7 | 4 | 47 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS50119 | 8.774 | 43 | 89 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.78E-5 | 47 | 76 | No hit | No description |
SMART | SM00336 | 1.2 | 48 | 97 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.338 | 313 | 355 | IPR010402 | CCT domain |
Pfam | PF06203 | 1.0E-15 | 313 | 355 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0048579 | Biological Process | negative regulation of long-day photoperiodism, flowering | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 371 aa Download sequence Send to blast |
MGYMCDFCSE QRSMVYCRSD AACLCLSCDR SVHSANALSK RHSRTLVCER CNAQPATVRC 60 VEERVSLCQN CDWSGHNNNN SSSSSSSPQQ QHKRQTISCY SGCPSSSELA SIWSFCLDLA 120 GQSICEQEMG MMNIDDNGPT HKNCNEDKKD VLIGSSSIPE SSSAALGSSS FAKKDVGVCE 180 DDFYGNLGMD EVDLALENYE ELFGVAFNPS EELFGHGGMD SLFQKHQTAP EGWNSVQPAG 240 SNDSFMSSKT EPIICFVSKP AHSNISFSGV TGESSPGDFQ ECGASSSMQL SGEPPWYPPA 300 SQENNACSHS VTRNNAVMRY KEKKKARKFD KRVRYASRKA RADVRRRVKG RFVKAGEAYD 360 YDPLTPTRSY * |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.22252s0262.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK316934 | 0.0 | AK316934.1 Arabidopsis thaliana AT3G07650 mRNA, complete cds, clone: RAFL14-22-K23. | |||
GenBank | BT029490 | 0.0 | BT029490.1 Arabidopsis thaliana At3g07650 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486334.1 | 0.0 | PREDICTED: zinc finger protein CONSTANS-LIKE 9-like | ||||
Swissprot | Q9SSE5 | 0.0 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | R0HZV4 | 0.0 | R0HZV4_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.22252s0262.1.p | 0.0 | (Boechera stricta) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G07650.4 | 0.0 | CONSTANS-like 9 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.22252s0262.2.p |