PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.22252s0065.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Trihelix

Protein Properties

Length: 475aa MW: 54354.3 Da PI: 8.0269

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.22252s0065.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	94.9	7.8e-30	88	174	1	87
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqlea 87 rW++qe+l L+e+r++++++++++++k+plW+evs+ m +e+g++rs k+C+ek+enl k+ykk+keg+ +r ++ +++++f+qlea Bostr.22252s0065.1.p 88 RWPRQETLMLLEVRSRLDHKFKEANQKGPLWDEVSRIMsEEHGYTRSGKKCREKFENLYKYYKKTKEGKAGR-RQDGKNYRFFRQLEA 174 8***********************************999*************************98.77888******85 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00717	6.5E-4	85	148	IPR001005	SANT/Myb domain
PROSITE profile	PS50090	7.097	87	146	IPR017877	Myb-like domain
CDD	cd12203	1.64E-18	88	153	No hit	No description
Pfam	PF13837	8.8E-20	88	175	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010197	Biological Process	polar nucleus fusion

Sequence ? help Back to Top
Protein Sequence Length: 475 aa Download sequence Send to blast
MEDHHHQNHP QYGIAQPSPH FPSDLFGFNL VSGPDQHHRL HLTDHEISFL PRGIQGLTVA 60 GNNSNTIVAS TSTRGGFSGF TDGGGTGRWP RQETLMLLEV RSRLDHKFKE ANQKGPLWDE 120 VSRIMSEEHG YTRSGKKCRE KFENLYKYYK KTKEGKAGRR QDGKNYRFFR QLEAIYGESK 180 DSVSCYNNTQ FIMTNALHSF DAPNVHNAVA HHQKPLSNTQ SLSISNNVNS SSEVDLTSSS 240 EGNKSTRSEG MNWKEKIKGF IGIHIERLIE KQDFWLEKLM KTVEDKEHQR MVKEEEWRRV 300 EAARVEKERS FSKKERERME ARDVAVIEAL QYLTGKALIR PNSSSPTERI NGNISDQTMA 360 DNEYADEENK SKMEKKQWNK KRKENWSSHG GNHPRIIENI MIYNNQETRI NDCSRDEEQG 420 HHEGYSPSNS KDGNPSCGIA MAASTNCFPL LVGDGNQNLW EGYGLKLRKE DNHQ*

Sequence ? help Back to Top

Protein Sequence Length: 475 aa Download sequence Send to blast

MEDHHHQNHP QYGIAQPSPH FPSDLFGFNL VSGPDQHHRL HLTDHEISFL PRGIQGLTVA  60
GNNSNTIVAS TSTRGGFSGF TDGGGTGRWP RQETLMLLEV RSRLDHKFKE ANQKGPLWDE  120
VSRIMSEEHG YTRSGKKCRE KFENLYKYYK KTKEGKAGRR QDGKNYRFFR QLEAIYGESK  180
DSVSCYNNTQ FIMTNALHSF DAPNVHNAVA HHQKPLSNTQ SLSISNNVNS SSEVDLTSSS  240
EGNKSTRSEG MNWKEKIKGF IGIHIERLIE KQDFWLEKLM KTVEDKEHQR MVKEEEWRRV  300
EAARVEKERS FSKKERERME ARDVAVIEAL QYLTGKALIR PNSSSPTERI NGNISDQTMA  360
DNEYADEENK SKMEKKQWNK KRKENWSSHG GNHPRIIENI MIYNNQETRI NDCSRDEEQG  420
HHEGYSPSNS KDGNPSCGIA MAASTNCFPL LVGDGNQNLW EGYGLKLRKE DNHQ*

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor that prevents growth. Regulates perianth architecture in flower, mostly in the second whorl, probably by suppressing growth between initiating sepals, ensuring that they remain separate, and by modulating organ shapes. Required for the establishment of auxin flux. {ECO:0000269\|PubMed:10572040, ECO:0000269\|PubMed:15269176, ECO:0000269\|PubMed:18080804}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.22252s0065.1.p

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression within the newly arising sepals is repressed via the PINOID auxin-response pathway. {ECO:0000269\|PubMed:15269176}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AJ630487	0.0	AJ630487.1 Arabidopsis thaliana mRNA for hypothetical protein, clone At3g10000.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010464660.1	0.0	PREDICTED: trihelix transcription factor PTL-like
Swissprot	Q9LZS0	1e-153	PTL_ARATH; Trihelix transcription factor PTL
TrEMBL	D7L8F3	0.0	D7L8F3_ARALL; Uncharacterized protein
STRING	Bostr.22252s0065.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2767	28	71

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G10000.1	0.0	Trihelix family protein

Link Out ? help Back to Top
Phytozome	Bostr.22252s0065.1.p

Publications ? help Back to Top
Quon T,Lampugnani ER,Smyth DR PETAL LOSS and ROXY1 Interact to Limit Growth Within and between Sepals But to Promote Petal Initiation in Arabidopsis thaliana. Front Plant Sci, 2017. 8: p. 152 [PMID:28228771]