PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0062.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 606aa    MW: 66183.2 Da    PI: 7.1446
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0062.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix66.36.3e-21223309186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm..rergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                           +W++  + +L++a++++ ++l+rg+l++ +Weev++ +  r +++++s +qCk+k++nl+kryk ++++++++  +s s++p+f+++e
  Bostr.22252s0062.1.p 223 EWSDAAIACLLDAYSDKFTQLNRGNLRGRDWEEVASSVseRCEKLSKSVEQCKNKIDNLKKRYKLERHRMSSG-GTSASHWPWFKKME 309
                           5*************************************888899****************************9.666779*******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138374.4E-22221311No hitNo description
Gene3DG3DSA:3.40.1160.102.9E-67356597IPR001048Aspartate/glutamate/uridylate kinase
SuperFamilySSF536331.7E-53364597IPR001048Aspartate/glutamate/uridylate kinase
CDDcd042543.90E-119366598No hitNo description
PfamPF006964.8E-25367577IPR001048Aspartate/glutamate/uridylate kinase
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005737Cellular Componentcytoplasm
Sequence ? help Back to Top
Protein Sequence    Length: 606 aa     Download sequence    Send to blast
MVTTVTLLTF CHVLFPLAKT GYLGLRLRFT TCSRLDAFFF RFFVLSPLIN AVSGAAAAVT  60
LTASLMASCD DDFSLLGDDQ SNPNQHQHHH HHQVLHHTPY APRRFTPKPS NQIHLPHHQR  120
NGDEDDENDV VVEASSAFHG VIPFAADENS NPYDDNNAAV DEDEDLDANR SRIGGVRAEK  180
RQNQEELSDG GTTNGGETTP YGSFKRPRTS SSSAGEYRKD REEWSDAAIA CLLDAYSDKF  240
TQLNRGNLRG RDWEEVASSV SERCEKLSKS VEQCKNKIDN LKKRYKLERH RMSSGGTSAS  300
HWPWFKKMED IVGNSLAIKG ASDEDRSGSS MGNAVKPARR YPLVTYNPGV QINNVKSKAT  360
SNPRWRRVVL KISGAALACT GPNNIDPKVI NLIAREVAMA CRLGVEVAIV VGSRNFFCGS  420
TWITATGLDR TTAYHISMMA SVMNSALLQS SLEKIGVQAR LQTAISVQGV GEPYNRQRAT  480
RHLDKGRVVI FGGIGATLGN PLLSSDASAA LRAIDINAEA VVKGTNVDGV YDCHSQDSNV  540
TFEHITFQDL ASRGLTSMDT MALNFCEENS IPVVVFNFLE AGNITKALCG EQVGTLIDRT  600
GRGVS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ek5_A2e-573575971239Uridylate kinase
3ek5_B2e-573575971239Uridylate kinase
3ek5_C2e-573575971239Uridylate kinase
3ek5_D2e-573575971239Uridylate kinase
3ek5_E2e-573575971239Uridylate kinase
3ek5_F2e-573575971239Uridylate kinase
3ek6_A2e-573575971239Uridylate kinase
3ek6_B2e-573575971239Uridylate kinase
3ek6_C2e-573575971239Uridylate kinase
3ek6_D2e-573575971239Uridylate kinase
3ek6_E2e-573575971239Uridylate kinase
3ek6_F2e-573575971239Uridylate kinase
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00340DAPTransfer from AT3G10030Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0062.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3754310.0AF375431.1 Arabidopsis thaliana AT3g10030/T22K18_15 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_566366.10.0aspartate/glutamate/uridylate kinase family protein
TrEMBLA0A384L5830.0A0A384L583_ARATH; Uncharacterized protein
TrEMBLQ94JR10.0Q94JR1_ARATH; AT3g10030/T22K18_15
STRINGBostr.22252s0062.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM93052631
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10030.10.0Trihelix family protein