PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.22252s0061.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 428aa    MW: 48709 Da    PI: 6.7983
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.22252s0061.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix71.21.9e-22108214186
              trihelix   1 rWtkqevlaLiearremeerlrrgk....................lkkplWeevskkmrergferspkqCkekwenlnkrykkikegek 69 
                           +Wt+ +v++Li a+ +++++ + +                     +kk++W++vs++m e+gf++sp+qC++k+++lnkryk+++++ +
  Bostr.22252s0061.1.p 108 KWTDTMVRLLIMAVFYIGDEAGLNDpidvkkktggggggggggmlQKKGKWKSVSRAMVEKGFSVSPQQCEDKFNDLNKRYKRVNDILG 196
                           7**************888888865445666778888899999999******************************************** PP

              trihelix  70 kr.tsessstcpyfdqle 86 
                           k+ +++++++  ++++++
  Bostr.22252s0061.1.p 197 KGiACRVVENQGLLESMD 214
                           **89*******9999998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138377.7E-20106240No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010629Biological Processnegative regulation of gene expression
GO:1900037Biological Processregulation of cellular response to hypoxia
GO:0005634Cellular Componentnucleus
Sequence ? help Back to Top
Protein Sequence    Length: 428 aa     Download sequence    Send to blast
MESNVMFSGF SPRMLSLEMP QNPQNPQNSV QFQHPHPYTT SGDQQTQPPI KPLYQYASAP  60
SKPKQLSPIS GGNGDDEDRG SGSGSGCNPE DSAGTDGKRK LSQWHRMKWT DTMVRLLIMA  120
VFYIGDEAGL NDPIDVKKKT GGGGGGGGGG MLQKKGKWKS VSRAMVEKGF SVSPQQCEDK  180
FNDLNKRYKR VNDILGKGIA CRVVENQGLL ESMDHLTPKL KDEVKKLLNS KHLFFREMCA  240
YHNSCGHIGG HDQPPQQNPI PIQQNCFHTA EAGKMARIVE SEEAEEEVES DMAEDSESEM  300
EESEEEEEEE ETKKKRRILT TAVKQLREEA ARVVEDVGKS VWEKKEWMRR KVLDIEEKKI  360
GYEWEAVEME KQRVKWVRYR SKKEREMEKA KLDNQRRRLE TERMVLMLRR SEIEFNVLQG  420
KRVDLTG*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1312316KKKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.22252s0061.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankATAC0109270.0AC010927.5 Arabidopsis thaliana chromosome III BAC T22K18 genomic sequence, complete sequence.
GenBankAY0910280.0AY091028.1 Arabidopsis thaliana unknown protein (At3g10040) mRNA, complete cds.
GenBankCP0026860.0CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006299896.10.0uncharacterized protein LOC17891806
TrEMBLR0HSJ60.0R0HSJ6_9BRAS; Uncharacterized protein
STRINGBostr.22252s0061.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM67622741
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G10040.10.0sequence-specific DNA binding transcription factors