PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.22252s0012.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 450aa MW: 50738.9 Da PI: 5.8184 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 169.6 | 1e-52 | 27 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l+pGfrFhPtdeelv +yLk+kv gk++++ ++i evdiyk+ePwdL +++k++++ewyfFs dkky +g r nrat++gyWkatg Bostr.22252s0012.1.p 27 LAPGFRFHPTDEELVIYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFFSALDKKYGNGARMNRATNKGYWKATG 114 579************************999.99**************8544899999******************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kd+e+ + + +l g+kktLvf++grap+g +t+Wvmheyrl Bostr.22252s0012.1.p 115 KDREIRR-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154 ******9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 3.53E-60 | 22 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.478 | 27 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 3.3E-27 | 29 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 450 aa Download sequence Send to blast |
MGRESLAVVT SPPSATAPCT AVSATSLAPG FRFHPTDEEL VIYYLKRKVL GKPVRFDAIG 60 EVDIYKHEPW DLAVFSRLKT RDQEWYFFSA LDKKYGNGAR MNRATNKGYW KATGKDREIR 120 RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE NNGSLLQDAY VLCRVFHKNN 180 IGPPSGNRYA PFMEEEWADG GGALIPGVDA RVRVEPLPQA NGNNQMDQEI HSASKNLINI 240 NELPRDGTPM DIEPNQQNHH ESDIKPQENK NRIAYDEDEE TLKCEHAEED ERPPPLCVLN 300 KEAPLPLLQY KRRRQNESNN SSRNTQDHCS STITTVDNTT TLISSSAAAT NTAISALLEF 360 SLMGISDKKE NQQPPPHKEA SPPPTPFASP EEKVNDLQKE IHQMSVERET FKLEMMSAEA 420 MISILQSRID ALRQENEELK KNNANGQAI* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ut4_A | 2e-49 | 22 | 180 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut4_B | 2e-49 | 22 | 180 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_A | 2e-49 | 22 | 180 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
1ut7_B | 2e-49 | 22 | 180 | 12 | 167 | NO APICAL MERISTEM PROTEIN |
3swm_A | 2e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swm_B | 2e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swm_C | 2e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swm_D | 2e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swp_A | 2e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swp_B | 2e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swp_C | 2e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
3swp_D | 2e-49 | 22 | 180 | 15 | 170 | NAC domain-containing protein 19 |
4dul_A | 2e-49 | 22 | 180 | 12 | 167 | NAC domain-containing protein 19 |
4dul_B | 2e-49 | 22 | 180 | 12 | 167 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC051/NAC052 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). {ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.22252s0012.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY059795 | 0.0 | AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. | |||
GenBank | AY091262 | 0.0 | AY091262.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486659.1 | 0.0 | PREDICTED: NAC domain-containing protein 59-like | ||||
Swissprot | Q9SQX9 | 0.0 | NAC50_ARATH; NAC domain containing protein 50 | ||||
TrEMBL | R0G4Z3 | 0.0 | R0G4Z3_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.22252s0012.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10480.1 | 0.0 | NAC domain containing protein 50 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.22252s0012.1.p |
Publications ? help Back to Top | |||
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