PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.22252s0011.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 451aa MW: 51009 Da PI: 5.9735 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 168.6 | 2e-52 | 27 | 154 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 l+pGfrFhPtdeelv++yLk+kv gk++++ ++i evdiyk+ePwdL +++k++++ewyf+s dkky +g r nrat++gyWkatg Bostr.22252s0011.1.p 27 LAPGFRFHPTDEELVSYYLKRKVLGKPVRF-DAIGEVDIYKHEPWDLAvfSRLKTRDQEWYFYSALDKKYGNGARMNRATNKGYWKATG 114 579************************999.99**************8544899999******************************** PP NAM 88 kdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 kd+e+ + + +l g+kktLvf++grap+g +t+Wvmheyrl Bostr.22252s0011.1.p 115 KDREIRR-DIQLLGMKKTLVFHSGRAPDGLRTNWVMHEYRL 154 ******9.999****************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-59 | 21 | 179 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 57.136 | 27 | 178 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.1E-26 | 29 | 154 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009555 | Biological Process | pollen development | ||||
GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem | ||||
GO:0005730 | Cellular Component | nucleolus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 451 aa Download sequence Send to blast |
MGRESVAVVT APPSGTAPGT AAAATSLAPG FRFHPTDEEL VSYYLKRKVL GKPVRFDAIG 60 EVDIYKHEPW DLAVFSRLKT RDQEWYFYSA LDKKYGNGAR MNRATNKGYW KATGKDREIR 120 RDIQLLGMKK TLVFHSGRAP DGLRTNWVMH EYRLVEYETE KNGNLVQDAY VLCRVFHKNN 180 IGPPSGNRYA PFMEEEWADD GGALIPGVDV RLRVEPPPVA NGNNQMDLEI QSASKSLINI 240 NEPPRETAPV DIEPNQQNHH ENAFKPQEHN NNINYDEDEE TLKREHTEED ERPPPLCVLN 300 KEAPLPLLQY KRRRQNESNN NTSRNTQDHC SSTTTTDTTT LISSSAAATN TAISALLEFS 360 LMGISDKKEN PQQPLRPHKE PSPQTPFASP EEKVNDLQKE IHQMSVERET FKLEMMSAEA 420 MISILQSRID ALRQENEELK KNNASGQQML * |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
3swm_A | 5e-48 | 26 | 180 | 19 | 170 | NAC domain-containing protein 19 |
3swm_B | 5e-48 | 26 | 180 | 19 | 170 | NAC domain-containing protein 19 |
3swm_C | 5e-48 | 26 | 180 | 19 | 170 | NAC domain-containing protein 19 |
3swm_D | 5e-48 | 26 | 180 | 19 | 170 | NAC domain-containing protein 19 |
3swp_A | 5e-48 | 26 | 180 | 19 | 170 | NAC domain-containing protein 19 |
3swp_B | 5e-48 | 26 | 180 | 19 | 170 | NAC domain-containing protein 19 |
3swp_C | 5e-48 | 26 | 180 | 19 | 170 | NAC domain-containing protein 19 |
3swp_D | 5e-48 | 26 | 180 | 19 | 170 | NAC domain-containing protein 19 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional repressor that binds to the motif 5'-(C/T)A(C/A)G-3' in the promoter of target genes (PubMed:25578968). Binds also to the 5'-CTTGNNNNNCAAG-3' consensus sequence in chromatin (PubMed:26617990). Can bind to the mitochondrial dysfunction motif (MDM) present in the upstream regions of mitochondrial dysfunction stimulon (MDS) genes involved in mitochondrial retrograde regulation (MRR) (PubMed:24045019). Together with NAC050 and JMJ14, regulates gene expression and flowering time by associating with the histone demethylase JMJ14, probably by the promotion of RNA-mediated gene silencing (PubMed:25578968, PubMed:26617990). Regulates siRNA-dependent post-transcriptional gene silencing (PTGS) through SGS3 expression modulation (PubMed:28207953). Required during pollen development (PubMed:19237690). {ECO:0000269|PubMed:19237690, ECO:0000269|PubMed:24045019, ECO:0000269|PubMed:25578968, ECO:0000269|PubMed:26617990, ECO:0000269|PubMed:28207953}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00612 | ChIP-seq | Transfer from AT3G10490 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.22252s0011.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by type III effector proteins (TTEs) secreted by the pathogenic bacteria P.syringae pv. tomato DC3000 during basal defense. {ECO:0000269|PubMed:16553893}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AY059795 | 0.0 | AY059795.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. | |||
GenBank | AY091262 | 0.0 | AY091262.1 Arabidopsis thaliana unknown protein (At3g10480) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641095.1 | 0.0 | NAC domain containing protein 52 isoform X1 | ||||
Refseq | XP_023641096.1 | 0.0 | NAC domain containing protein 52 isoform X1 | ||||
Swissprot | Q9SQY0 | 0.0 | NAC52_ARATH; NAC domain containing protein 52 | ||||
TrEMBL | A0A178VCW1 | 0.0 | A0A178VCW1_ARATH; NAC052 | ||||
STRING | Bostr.22252s0011.1.p | 0.0 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1780 | 28 | 80 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10490.2 | 0.0 | NAC domain containing protein 52 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.22252s0011.1.p |
Publications ? help Back to Top | |||
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