PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.22252s0001.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | MYB_related | ||||||||
Protein Properties | Length: 214aa MW: 24544.6 Da PI: 5.7524 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 51.3 | 2.6e-16 | 94 | 138 | 3 | 47 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +W+teE+ l++d+ +++G+g+Wk+I+r+ k+R++ q+ s+ qky Bostr.22252s0001.1.p 94 PWSTEEHRLFLDGLEKYGKGDWKSISRECVKTRSPTQVASHAQKY 138 7*******************************************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 1.3 | 3 | 54 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.22E-6 | 6 | 60 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 18.135 | 86 | 143 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 6.68E-17 | 90 | 143 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 4.9E-10 | 91 | 141 | IPR001005 | SANT/Myb domain |
TIGRFAMs | TIGR01557 | 5.7E-16 | 91 | 142 | IPR006447 | Myb domain, plants |
Gene3D | G3DSA:1.10.10.60 | 1.1E-10 | 92 | 138 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.2E-12 | 94 | 138 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 5.39E-11 | 94 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MASIPQWTRD DDKRFELALV QFPEGSPSFL ENIAQLLQKP LEEVKYYYEA LVDDVALIES 60 GKVALPKYPE DDDVSLKEAT QSKKLRKKIR KGIPWSTEEH RLFLDGLEKY GKGDWKSISR 120 ECVKTRSPTQ VASHAQKYFL RQELGIKRGK RLSIHDMTLP GDAENVTVPG SNLNSKGQQL 180 QFGDQIPPDQ YYHYSQDNFG LFDDDDDKWF SKL* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 82 | 90 | KKLRKKIRK |
2 | 83 | 89 | KLRKKIR |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that coordinates abscisic acid (ABA) biosynthesis and signaling-related genes via binding to the specific promoter motif 5'-(A/T)AACCAT-3'. Represses ABA-mediated salt (e.g. NaCl and KCl) stress tolerance. Regulates leaf shape and promotes vegetative growth. {ECO:0000269|PubMed:26243618}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00344 | DAP | Transfer from AT3G10580 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.22252s0001.1.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by salicylic acid (SA) and gibberellic acid (GA) (PubMed:16463103). Triggered by dehydration and salt stress (PubMed:26243618). {ECO:0000269|PubMed:16463103, ECO:0000269|PubMed:26243618}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC011560 | 7e-77 | AC011560.6 Arabidopsis thaliana chromosome 3 BAC F13M14 genomic sequence, complete sequence. | |||
GenBank | ATAC013428 | 7e-77 | AC013428.6 Arabidopsis thaliana chromosome III BAC F18K10 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 7e-77 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010486370.1 | 1e-103 | PREDICTED: transcription factor DIVARICATA-like | ||||
Swissprot | Q9FNN6 | 4e-39 | SRM1_ARATH; Transcription factor SRM1 | ||||
TrEMBL | D7L911 | 7e-98 | D7L911_ARALL; Uncharacterized protein | ||||
STRING | Bostr.22252s0001.1.p | 1e-156 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14731 | 7 | 19 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G10580.2 | 1e-100 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.22252s0001.1.p |
Publications ? help Back to Top | |||
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