PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.2128s0069.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 233aa MW: 27070.3 Da PI: 7.5611 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.4 | 2.4e-18 | 80 | 132 | 4 | 56 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 ++t+eql Le +F+++ +++ e++ +LAk+l+L+ +qV vWFqNrRa++k Bostr.2128s0069.1.p 80 NKRLTSEQLASLELHFQEDFKLDSERKLKLAKELSLKPSQVAVWFQNRRARWK 132 5679************************************************9 PP | |||||||
2 | HD-ZIP_I/II | 106.3 | 2.3e-34 | 78 | 166 | 1 | 89 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +k +rl++eq+++LE +F+e+ kL++erK +la+eL l+p qvavWFqnrRAR+k k+lE+ y++L+++y+a+ +e++ L++ev++Lr+ Bostr.2128s0069.1.p 78 KKNKRLTSEQLASLELHFQEDFKLDSERKLKLAKELSLKPSQVAVWFQNRRARWKVKHLEESYDSLRQEYEAVWKEKQILHDEVKKLRA 166 589************************************************************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 4.28E-18 | 66 | 133 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 5.9E-19 | 72 | 139 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 16.617 | 74 | 134 | IPR001356 | Homeobox domain |
SMART | SM00389 | 6.5E-17 | 77 | 138 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.53E-14 | 78 | 135 | No hit | No description |
Pfam | PF00046 | 7.4E-16 | 79 | 132 | IPR001356 | Homeobox domain |
PROSITE pattern | PS00027 | 0 | 109 | 132 | IPR017970 | Homeobox, conserved site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 233 aa Download sequence Send to blast |
MEWSMTSNVQ NERVDSMPPP WLESDYSNSL RSFNYNPYAG NSSNYPAYTQ TGPVISVPES 60 EKIINAYQCP SNNNEMIKKN KRLTSEQLAS LELHFQEDFK LDSERKLKLA KELSLKPSQV 120 AVWFQNRRAR WKVKHLEESY DSLRQEYEAV WKEKQILHDE VKKLRAIILR DQGLMMNINQ 180 IAGGGQTNVF YSVKETPHNK LICDVGEEAE SYNTKRSGFD DEQQPNRQRR SN* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.2128s0069.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KM214233 | 1e-100 | KM214233.1 Capsella grandiflora isolate C.g926a RCO-A (RCO-A) gene, complete cds. | |||
GenBank | KM214234 | 1e-100 | KM214234.1 Capsella grandiflora isolate C.g926b RCO-A (RCO-A) gene, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_020879296.1 | 1e-110 | putative homeobox-leucine zipper protein ATHB-51 | ||||
Swissprot | Q9LZR0 | 3e-84 | ATB51_ARATH; Putative homeobox-leucine zipper protein ATHB-51 | ||||
TrEMBL | D7LWT8 | 1e-111 | D7LWT8_ARALL; Predicted protein | ||||
STRING | Bostr.2128s0069.1.p | 1e-173 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM1660 | 28 | 88 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G03790.1 | 1e-86 | homeobox 51 |
Link Out ? help Back to Top | |
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Phytozome | Bostr.2128s0069.1.p |
Publications ? help Back to Top | |||
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