PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Previous version: v3.0 v4.0

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Bostr.20903s0181.1.p

Organism

Boechera stricta

Taxonomic ID

72658

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera

Family

Nin-like

Protein Properties

Length: 927aa MW: 102328 Da PI: 5.2403

Description

Nin-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Bostr.20903s0181.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	RWP-RK	92.6	3e-29	567	617	2	52
RWP-RK 2 ekeisledlskyFslpikdAAkeLgvclTvLKriCRqyGIkRWPhRkiksl 52 ek++sl++l++yFs+++kdAAk+Lgvc+T+LKriCRq+GI+RWP+Rki+++ Bostr.20903s0181.1.p 567 EKNVSLNVLQQYFSGSLKDAAKSLGVCPTTLKRICRQHGIMRWPSRKINKV 617 89***********************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51519	17.166	551	637	IPR003035	RWP-RK domain
Pfam	PF02042	2.9E-27	569	617	IPR003035	RWP-RK domain
SuperFamily	SSF54277	2.32E-22	813	909	No hit	No description
Gene3D	G3DSA:3.10.20.240	1.4E-22	821	904	No hit	No description
PROSITE profile	PS51745	21.217	824	907	IPR000270	PB1 domain
SMART	SM00666	1.7E-24	824	907	IPR000270	PB1 domain
CDD	cd06407	2.37E-34	825	906	No hit	No description
Pfam	PF00564	2.4E-17	825	906	IPR000270	PB1 domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 927 aa Download sequence Send to blast
MEIPSASREQ GFCFPDIPAE EVDGWVKYLI SEGDMFSSSS TSELMNLESF ASWSNNSPSA 60 TDILFTQYGL STSQSTTPFV GLEGSNVGEK RPVQEMSSQF CCLSDIEKIS GKRSKGNNQT 120 SSLSGTVDCS VPRSLSHSLD EKMLKALSLF MEFSGEGILA QFWTPIKTGD QYMLSTCDQA 180 YLLDSRLSGY REVSRKFTFS AEANQCSYPG LPGRVFISGV PEWTSNVMYY KTSEYLRIKH 240 ALDNDVRGST AIPILEASGS SCCAVLELVT CREKPNFDVE MDSVCRALQA VNLQTSTIPR 300 RQYLSSNQKE ALAEIRDVLR AVCHAHRLPL ALAWIPCSYS KGANNELVKV YGKNSREISL 360 LCIEETACYV NDMEMEGYVN ACLEHHLREG QGIVGKALIS NKPSFSSDVK TFDICEYPLV 420 QHARKFGLNA AVATKLRSTF TGDNDYILEF FLPVSMKGSS EQQLLLDSLS GTMQKLCRTL 480 RTVLDAESNE VMEVGFHSGE MSNLPQVTTV SEESFQTTFL DTDVNSTTSI FSNMSSDKTN 540 DIAGSQGTLQ QEISGKTRSE KKKSSTEKNV SLNVLQQYFS GSLKDAAKSL GVCPTTLKRI 600 CRQHGIMRWP SRKINKVNRS LRKIQTVLDS VQGVERGLKF DSVIGEFVAV GPFIQEFNSQ 660 KTLTSHHEDA FVRSQCDMDE DASLEPLKVK SHDGGGVKPE ESVETNQTGP ESLMEPWAWI 720 SKQPGLNYSD DIDIGKRSEK VKKDKDLCVR RCLSSVALAD DEMNTRIEGG NRIVEPNQPI 780 SSSMSDSSNS SGAVVLGSSS TSMEQNWNQI RTHNNSGESG SSSTLTVKAT YRDDTVRFKL 840 DPYIVGCSQL YREVAKRFKL QEGAFQLKYL DDEEEWVMLV TDSDLHECFE ILNGMRKHTV 900 KFLVRDSPGA AVGSSAGSNG YLGTGP*

Sequence ? help Back to Top

Protein Sequence Length: 927 aa Download sequence Send to blast

MEIPSASREQ GFCFPDIPAE EVDGWVKYLI SEGDMFSSSS TSELMNLESF ASWSNNSPSA  60
TDILFTQYGL STSQSTTPFV GLEGSNVGEK RPVQEMSSQF CCLSDIEKIS GKRSKGNNQT  120
SSLSGTVDCS VPRSLSHSLD EKMLKALSLF MEFSGEGILA QFWTPIKTGD QYMLSTCDQA  180
YLLDSRLSGY REVSRKFTFS AEANQCSYPG LPGRVFISGV PEWTSNVMYY KTSEYLRIKH  240
ALDNDVRGST AIPILEASGS SCCAVLELVT CREKPNFDVE MDSVCRALQA VNLQTSTIPR  300
RQYLSSNQKE ALAEIRDVLR AVCHAHRLPL ALAWIPCSYS KGANNELVKV YGKNSREISL  360
LCIEETACYV NDMEMEGYVN ACLEHHLREG QGIVGKALIS NKPSFSSDVK TFDICEYPLV  420
QHARKFGLNA AVATKLRSTF TGDNDYILEF FLPVSMKGSS EQQLLLDSLS GTMQKLCRTL  480
RTVLDAESNE VMEVGFHSGE MSNLPQVTTV SEESFQTTFL DTDVNSTTSI FSNMSSDKTN  540
DIAGSQGTLQ QEISGKTRSE KKKSSTEKNV SLNVLQQYFS GSLKDAAKSL GVCPTTLKRI  600
CRQHGIMRWP SRKINKVNRS LRKIQTVLDS VQGVERGLKF DSVIGEFVAV GPFIQEFNSQ  660
KTLTSHHEDA FVRSQCDMDE DASLEPLKVK SHDGGGVKPE ESVETNQTGP ESLMEPWAWI  720
SKQPGLNYSD DIDIGKRSEK VKKDKDLCVR RCLSSVALAD DEMNTRIEGG NRIVEPNQPI  780
SSSMSDSSNS SGAVVLGSSS TSMEQNWNQI RTHNNSGESG SSSTLTVKAT YRDDTVRFKL  840
DPYIVGCSQL YREVAKRFKL QEGAFQLKYL DDEEEWVMLV TDSDLHECFE ILNGMRKHTV  900
KFLVRDSPGA AVGSSAGSNG YLGTGP*

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Bostr.20903s0181.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AK220674	0.0	AK220674.1 Arabidopsis thaliana mRNA for putative protein, complete cds, clone: RAFL21-80-B11.
GenBank	BT010459	0.0	BT010459.1 Arabidopsis thaliana RWP-RK domain containing protein (At3g59580) mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010413675.1	0.0	PREDICTED: protein NLP9-like
Swissprot	Q9M1B0	0.0	NLP9_ARATH; Protein NLP9
TrEMBL	R0FN83	0.0	R0FN83_9BRAS; Uncharacterized protein
STRING	Bostr.20903s0181.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2299	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G59580.2	0.0	Nin-like family protein

Link Out ? help Back to Top
Phytozome	Bostr.20903s0181.1.p