PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20903s0103.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family Trihelix
Protein Properties Length: 323aa    MW: 36286.6 Da    PI: 9.692
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20903s0103.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix43.77.4e-1426125186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.............rergferspkqCkekwenlnkrykkikegekkrt.ses 75 
                           +W+++ + +Li+a  ++  +l+rg+l++++W+ev++++             ++ +  r+  qCk++++ l+k+yk +k++ ++ +    
  Bostr.20903s0103.1.p  26 CWSEEATFTLIQAWGNRFVELNRGNLRQKHWQEVANAVndrhfntgrnvsaAKSQPYRTDAQCKNRIDTLKKKYKVEKARVSESNpGAY 114
                           7************************************************99777778999******************99888752456 PP

              trihelix  76 sstcpyfdqle 86 
                            s +p+f+ l+
  Bostr.20903s0103.1.p 115 ISPWPFFSALD 125
                           789****9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.6E-2424127No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MMDSFNDSFS PESSRPSPST LSREDCWSEE ATFTLIQAWG NRFVELNRGN LRQKHWQEVA  60
NAVNDRHFNT GRNVSAAKSQ PYRTDAQCKN RIDTLKKKYK VEKARVSESN PGAYISPWPF  120
FSALDDLLRE SFPTSSTPDS TDNNPNQRLS LPMANIPVPV APRSAIPRRP ATSPAIIPHG  180
SDDLLGFRGN LNAFAAAAAA AACPASEDDS EGSRSRSSGR SGSNKKRERE IERKQGYKEV  240
ADAIERLGQI YERVEERKRK EMLELEKQRM RFAKELECHR MQLFTEMQVR LHKLRRASGS  300
KGPTSSASAA LDYGMMDFPS YF*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00413DAPTransfer from AT3G58630Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20903s0103.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK1180840.0AK118084.1 Arabidopsis thaliana At3g58630 mRNA for unknown protein, complete cds, clone: RAFL19-33-K15.
GenBankBT0055200.0BT005520.1 Arabidopsis thaliana clone U50694 unknown protein (At3g58630) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_191422.20.0sequence-specific DNA binding transcription factor
TrEMBLA0A384LCJ30.0A0A384LCJ3_ARATH; Uncharacterized protein
TrEMBLQ8GXR60.0Q8GXR6_ARATH; Sequence-specific DNA binding transcription factor
STRINGBostr.20903s0103.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM96352334
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.11e-162sequence-specific DNA binding transcription factors