PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20903s0035.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family bHLH
Protein Properties Length: 371aa    MW: 40213.9 Da    PI: 5.5711
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20903s0035.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH27.36.6e-09205252455
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +h+ +Er RR++iN ++  L+el+P +    +k    a +L + +++++sLq
  Bostr.20903s0035.1.p 205 SHSLAERARREKINARMKLLQELVPGC----DKIQGTALVLDEIINHVQSLQ 252
                           8*************************9....889****************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF474592.09E-15199270IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.38E-9199256No hitNo description
PROSITE profilePS5088814.684201251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.4E-15201269IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-6205252IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.7E-8207257IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 371 aa     Download sequence    Send to blast
MDLTGGFGAR SGGGGPCQEA IGLESLHLGD EFRQLVTTLP SDNAGGSFTA LLELPATQAV  60
ELLHFTDSSS SQAAVTGIDG DIAPPLHSFG GTLTFPSNSV LMERAARFSV IATEQQNGNV  120
PGETPTSSVP SNSSANLDRV KSEPAEADSA MENQVPCPIQ NNRSGKRKDF EKKVKSSTKK  180
TKSSEETEKL PYVHVRARRG QATDSHSLAE RARREKINAR MKLLQELVPG CDKIQGTALV  240
LDEIINHVQS LQRQVEMLSM RLAAVNPRID FNLDTILASE NGSLMDGSFN GTAMQLAWPH  300
QAIETEQSFH HRQLQPPPPQ QWPFDGLNQP VWGREEDQVH GNDHSNLMAV SENVMVGSAN  360
LHPNQVKMEL *
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20903s0035.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY1397730.0AY139773.1 Arabidopsis thaliana AT3g57800/T10K17_10 mRNA, complete cds.
GenBankBT0030370.0BT003037.1 Arabidopsis thaliana AT3g57800/T10K17_10 gene, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_850745.10.0basic helix-loop-helix (bHLH) DNA-binding superfamily protein
SwissprotQ3EAI10.0BH060_ARATH; Transcription factor bHLH60
TrEMBLA0A178V8Y30.0A0A178V8Y3_ARATH; Uncharacterized protein
STRINGBostr.20903s0035.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM25762771
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57800.20.0bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Li Y,Wang H,Li X,Liang G,Yu D
    Two DELLA-interacting proteins bHLH48 and bHLH60 regulate flowering under long-day conditions in Arabidopsis thaliana.
    J. Exp. Bot., 2017. 68(11): p. 2757-2767
    [PMID:28591805]