PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Bostr.20821s0001.1.p
Organism
Boechera stricta
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
Family MYB
Protein Properties Length: 426aa    MW: 48385.9 Da    PI: 8.2319
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Bostr.20821s0001.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding51.81.9e-16106152148
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                           +g WT+eEd +l+++v+q+G + W+  ++++  gR +kqc++rw+++l
  Bostr.20821s0001.1.p 106 KGQWTAEEDRKLIRLVRQHGERKWAMMSEKLE-GRAGKQCRERWHNHL 152
                           799*****************************.*************97 PP
2Myb_DNA-binding42.81.2e-13159200245
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           + W++eE+ +lv  + + G++ W+ Ia+ ++ gRt++++k++w+
  Bostr.20821s0001.1.p 159 DGWSEEEERILVGSHLRIGNK-WAEIAKLIP-GRTENSIKNHWN 200
                           56*******************.*********.***********8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129427.251101156IPR017930Myb domain
SuperFamilySSF466897.86E-28103199IPR009057Homeodomain-like
SMARTSM007175.3E-15105154IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.607.1E-26107159IPR009057Homeodomain-like
PfamPF139212.0E-17109167No hitNo description
CDDcd001675.20E-14109152No hitNo description
SMARTSM007171.1E-11157205IPR001005SANT/Myb domain
PROSITE profilePS5129415.257157207IPR017930Myb domain
Gene3DG3DSA:1.10.10.606.3E-19160205IPR009057Homeodomain-like
CDDcd001679.58E-9161203No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MEDRRLVHGA APPLTAVERF LYGQKNDALC SKKQECFRDR PIVKTKMSMI ETRSDNKENT  60
TFRPTREKHL VLNGGNRSPT GEVVTKSVAR YYQNSTKKRP YKNLIKGQWT AEEDRKLIRL  120
VRQHGERKWA MMSEKLEGRA GKQCRERWHN HLRPDIKKDG WSEEEERILV GSHLRIGNKW  180
AEIAKLIPGR TENSIKNHWN ATKRRQNSKR KHKRESNADN NDSDVSLSAK RPCILQDYIK  240
SIENNGIYKN DDEITISILS TPNLDQIYSD GDSTSSIPGD PYDEELVYLQ NIFANHPISL  300
ENIGLTQTSD EVTQSSSSGF MISKPNKHNN VETHHEEATI TAPANTPHLA SDIYLSNLLN  360
GTTSSYYDTH FPSSSSSTSS TTVEHGGHNE FLEPQVNSTS ERREMDLIEM LSGSIQGSNI  420
CFPLF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1gv2_A2e-431042062104MYB PROTO-ONCOGENE PROTEIN
1h88_C1e-4210420656158MYB PROTO-ONCOGENE PROTEIN
1h89_C1e-4210420656158MYB PROTO-ONCOGENE PROTEIN
1mse_C2e-431042062104C-Myb DNA-Binding Domain
1msf_C2e-431042062104C-Myb DNA-Binding Domain
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1202213KRRQNSKRKHKR
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor required for female gametophyte fertility. Acts redundantly with MYB64 to initiate the FG5 transition during female gametophyte development. The FG5 transition represents the switch between free nuclear divisions and cellularization-differentiation in female gametophyte, and occurs during developmental stage FG5. {ECO:0000269|PubMed:24068955}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00567DAPTransfer from AT5G58850Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapBostr.20821s0001.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF3719780.0AF371978.1 Arabidopsis thaliana putative transcription factor MYB119 (MYB119) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqNP_568891.10.0myb domain protein 119
SwissprotQ9FIM40.0MY119_ARATH; Transcription factor MYB119
TrEMBLD7L5780.0D7L578_ARALL; MYB119
STRINGBostr.20821s0001.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM42652656
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G58850.10.0myb domain protein 119
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]