PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Bostr.20505s0102.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Boechereae; Boechera
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Family | NAC | ||||||||
Protein Properties | Length: 169aa MW: 19790.3 Da PI: 5.3305 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 69.1 | 1.2e-21 | 8 | 130 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 lp+GfrF+P+++e+ +++Lkkk+ g+++++ +v +e+ di++ +P+dLp +e++wy+F+++++++ t ++ W g+ Bostr.20505s0102.1.p 8 LPVGFRFRPSNSEMSNYFLKKKALGEPMKTRTVPEEChDIFSRHPRDLPGY--PREEHWYYFCRKRNNQVTC------NSHNLWTPIGQ 88 79****************************88888889***********43..4789*******98876542......23457****** PP NAM 89 dkevlsk..kgelvglkktLvfykgrapkgektdWvmheyrl 128 +++vl+ +g+lvg+k+ + +++++ k +W+m+e +l Bostr.20505s0102.1.p 89 ETNVLDPknNGALVGIKQFDNIFLSDEEEAPKYNWFMDEISL 130 *****98778888*****998888999999*********876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 4.84E-28 | 6 | 147 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 30.597 | 8 | 147 | IPR003441 | NAC domain |
Pfam | PF02365 | 1.6E-10 | 9 | 129 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 169 aa Download sequence Send to blast |
MEPIYRALPV GFRFRPSNSE MSNYFLKKKA LGEPMKTRTV PEECHDIFSR HPRDLPGYPR 60 EEHWYYFCRK RNNQVTCNSH NLWTPIGQET NVLDPKNNGA LVGIKQFDNI FLSDEEEAPK 120 YNWFMDEISL PQTVADTDWV LCHIFGKKIK PEFFDLRIIE SESEEDAA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Bostr.20505s0102.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | DQ056627 | 1e-107 | DQ056627.1 Arabidopsis thaliana no apical meristem family protein (At3g56520) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | NP_191211.1 | 5e-98 | NAC (No Apical Meristem) domain transcriptional regulator superfamily protein | ||||
TrEMBL | A0A178VFA9 | 7e-98 | A0A178VFA9_ARATH; Uncharacterized protein | ||||
STRING | Bostr.20505s0102.1.p | 1e-124 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM8604 | 17 | 36 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G56520.1 | 1e-101 | NAC family protein |
Link Out ? help Back to Top | |
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Phytozome | Bostr.20505s0102.1.p |